BtaEX6028505 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93673526-93678889:-
Coord C1 exon
chr4:93678793-93678889
Coord A exon
chr4:93677333-93677421
Coord C2 exon
chr4:93673526-93673619
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCCTGTCTCCCCCAGCTC
3' ss Score
10.12
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCAGGGACAGTGCGGTGCCAGGGGCCCTCATGCTCAGAGCTCAACTGCCTGGAGAGCTACACCCCACCTGGGGAGTGCTGCCCCGTCTGCCGGCCAG
Seq A exon
CTCAAGGCTGCACAGAAAATGGTTCTCACTGGGAGCATGGCCAAGAGTGGACCACCCCTGGGGACCCCTGCCGGATCTGCCAGTGCCTG
Seq C2 exon
GAAGGCCACATCCTGTGCCGCCAGCGGGAATGTGCCAGTCTGTGCCCATACCCTGCCCGGCCCCTCCCGGGCACCTGCTGCCCGGTGTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-'8-14,'8-13,14-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(52.7=87.9)
A:
PF0009313=VWC=PU(45.6=86.7)
C2:
PF0009313=VWC=PD(50.9=90.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCATGCTCAGAGCTCAAC
R:
CATCACACACCGGGCAGC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]