RnoEX0046264 @ rn6
Exon Skipping
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56777581-56781347:-
Coord C1 exon
chr4:56781254-56781347
Coord A exon
chr4:56780171-56780259
Coord C2 exon
chr4:56777581-56777674
Length
89 bp
Sequences
Splice sites
3' ss Seq
GGCCTGCTCTCTATCCCTAGCCT
3' ss Score
8.55
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGGAGCCTGGTTCGGTGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCCCAACCCAGTCCTGAGACCTGGACACTGCTGCCCAGTCTGCCAAG
Seq A exon
CCTCCGGCTGCACAGAAGGTCACTCTCACAGGGACCATGGCCAAGAGTGGACCACTCCTGGAGACCCCTGCCGCATCTGCCAGTGCCTG
Seq C2 exon
GAGGGGCACATCCAGTGCCGCCAGCAGGAGTGTGCCAGTCTTTGTCCATACCCTGCCAGGCCCCTTCCGGGTACCTGCTGCCCAGTGTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855-'11-12,'11-10,12-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(50.9=90.6)
A:
PF0009313=VWC=PU(45.6=86.7)
C2:
PF0009313=VWC=PD(50.9=90.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGGTGTGTGCCTGTGAAG
R:
ACACACTGGGCAGCAGGTA
Band lengths:
175-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]