BtaEX6029074 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020453 | CLEC5A
Description
C-type lectin domain family 5, member A [Source:HGNC Symbol;Acc:HGNC:2054]
Coordinates
chr4:106066952-106070381:-
Coord C1 exon
chr4:106070303-106070381
Coord A exon
chr4:106069256-106069315
Coord C2 exon
chr4:106066952-106067011
Length
60 bp
Sequences
Splice sites
3' ss Seq
ACAGCTGATTTTCTTTGCAGTCC
3' ss Score
7.59
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATGAACTGGCATATGATAATCTCTGCGCTTATAGTAGTGGTGCTTAAGATTGTTGGAATGACCTTATTTCTGCTTTATT
Seq A exon
TCCCACAGATTTTTGGTGAAAATAATGCCATCTTCATTCCCACAGAGAGCTCTGCAACAG
Seq C2 exon
TCCCACAGATTTTGGGGAATGGCACTGTCAGCTTCACTCCAACAGAGAGCTACGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020453-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATATGATAATCTCTGCGCT
R:
TGTTCCGTAGCTCTCTGTTGGA
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]