HsaEX0000058 @ hg38
Exon Skipping
Gene
ENSG00000258227 | CLEC5A
Description
C-type lectin domain family 5 member A [Source:HGNC Symbol;Acc:HGNC:2054]
Coordinates
chr7:141943896-141946312:-
Coord C1 exon
chr7:141946214-141946312
Coord A exon
chr7:141945341-141945400
Coord C2 exon
chr7:141943896-141943964
Length
60 bp
Sequences
Splice sites
3' ss Seq
ACAGCTGATTTTCTTTTCAGTCC
3' ss Score
7.51
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCCCCTGCAGCTCCTTCATCATGAACTGGCACATGATCATCTCTGGGCTTATTGTGGTAGTGCTTAAAGTTGTTGGAATGACCTTATTTCTACTTTATT
Seq A exon
TCCCACAGATTTTTAACAAAAGTAACGATGGTTTCACCACCACCAGGAGCTATGGAACAG
Seq C2 exon
TCTCACAGATTTTTGGGAGCAGTTCCCCAAGTCCCAACGGCTTCATTACCACAAGGAGCTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000258227-'1-4,'1-1,2-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(12.3=90.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCAGCTCCTTCATCATG
R:
AATGAAGCCGTTGGGACTTGG
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development