HsaINT1007826 @ hg38
Intron Retention
Gene
ENSG00000258227 | CLEC5A
Description
C-type lectin domain family 5 member A [Source:HGNC Symbol;Acc:HGNC:2054]
Coordinates
chr7:141943896-141945400:-
Coord C1 exon
chr7:141945341-141945400
Coord A exon
chr7:141943965-141945340
Coord C2 exon
chr7:141943896-141943964
Length
1376 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
AGGTTTACTTTTCACTTTAGTCT
3' ss Score
5.12
Exon sequences
Seq C1 exon
TCCCACAGATTTTTAACAAAAGTAACGATGGTTTCACCACCACCAGGAGCTATGGAACAG
Seq A exon
GTAATCTGCATGGTGGTAAATCTTCTCCCCATCCTCCTGCTACTTCTATGCTGAATTCCTAGAGACCTTCCACACAGCCTCCTTTCCCAAGAAATTCTTTTGTACAAAGGGTCCATAAAGATCTTCTAATTAATTCCCTTTCTTTTACATATGAGAAAACCAAGAGCAGACTGAGGGAAATTTCTGATCCTTAGTTTTTCTCCTGGATATGGGGATGATTTATATCTAATCATTGTAATAGAATGTGAAAGTGCTTAATAGCCAGTAGCTATGGGAGATAGAGAGATGAGTGGGGCATGGTTCTCCTCTCCCGATTAAACCAGCTTCCTTCTGAAGCCTTTCCCAACAACATCCTCTCACTTCCTCTTAAGACACCTATTACTACTGACATCGTTAGGAGAAAGACCGTTTCTCATTTATCTTAGTATCAACAGAGGCAACCCAATACAGTGAGCTGTATGGAGAAAATACTCATAAAATATGTATTGAGTCCTTAAGTTATAATCTCAAAGTAGTTTCTGATGAAAACCAGGCTATTACATCTTAGAGTCTATAAACGGGGTACTGAAATAAAAAGTGAATGCCAATTTGTTTCATTAAGATAAATGTAAGTAACTAATTTGATGTCAGAGTAAAGTGGTCTTCAACCACAATGGACAAATAACTGGCAGCCCAATTAGATGTTTGACCAGCCTCTGAAGCCACTGCGGCTGCCTGCTCAGACAGCCAGTGTTCCCAGGGAAATGAGGCCCCTATATGGATTTCTAGAAATGAATGGACCCTTCCCTGCTTATAGAAAATCTCCCTAAAGTTCACCTGCTTCCTTGTCTGATAATATCCCCTTGGCCCTGAAATTTTGTTCCAATTAGCTTCAATCCTTAGAGCTAATACAGTGCTGATGAGAAAAGAGTCCCAGAGTTGCCCAGGATTATGAATTTTCATACTGAATCTGGGACACCAGAAGTAGAAAGAACAGCAAAGATGCTGTGTGGAGCCTGGGCGAGAAGTACTCCAAACAGTCCTTTGGAGAAAACACTGTCAAAGGTTTATATACGATAGGAGTGTGAGAGTTTCTCTCTGATACTAAATTCCTCCATTACTTTTCCTTTCTTCTGTTCTTTTTCTCAGGATTTGATGCCTATGGCTACATCAAAAAAAGGAGACATGAAATAGGATTTGGGTGTCAAGTTGACAAATAATGATAGTAGTTAGATGGAAGGCTCAAAGAAAGAAATTATTTGAAATGTTCTAGCTCAGAGTGGCCAAGAGCTTCTTGTCATCTCCATGATTCAGAGTCACACAGCCCATACTCTGATGTTTCTGTTTCTGTGTTGTATTCATCATACCATAACCTTTAGGTTTACTTTTCACTTTAG
Seq C2 exon
TCTCACAGATTTTTGGGAGCAGTTCCCCAAGTCCCAACGGCTTCATTACCACAAGGAGCTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000258227:ENST00000546910:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(12.3=90.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains