RnoINT0037232 @ rn6
Intron Retention
Gene
ENSRNOG00000026306 | Clec5a
Description
C-type lectin domain containing 5A [Source:RGD Symbol;Acc:1584755]
Coordinates
chr4:68814444-68818505:-
Coord C1 exon
chr4:68818431-68818505
Coord A exon
chr4:68814504-68818430
Coord C2 exon
chr4:68814444-68814503
Length
3927 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATC
5' ss Score
4.14
3' ss Seq
AGGATTTCTTTTCATTTCAGTCT
3' ss Score
6.1
Exon sequences
Seq C1 exon
TCCCACAGGTTTTTGGCAAAAGTAGTGATGGCTTCATCCCCACGGAGAGCTACGGAACCACTAATGTGCAGAATG
Seq A exon
GTAATCTCTCTACTATCCAGATTCTATGTCGTGAATTCTAACAGTTCCTATGAATTTGCATACAGATGCCATGCAAAGGTCCTATTCTCCTTTACAAGTGTGGAAATGAACAGCAAACTCATTGATCGTTGTCTCTTCCGGGCTTTGTCCCCTATCGGTACTAGAGATCTAATCCAGGGCCTTGCTCATAGAAAGCACAAAGTCTAGTACTGAGCTATAAATCCCCTAGACCCTGTATGAAATGTATGATCCTCAGGTTCCCTCATGGGCTTGAGAATGAATTGTATGGGACTACTATAATGGATTGTAAATGATTTTCATAGAATCTTTTTGTTTACACTCCACATCCGAGTGTATACCAGTCCACCCCCCTCTCCGAGTTCCACATCCCACACCTCCTTCCTGCCCACCCCCTGCACTCCCTCCCTGCACACCTGGTCTCCATGAGGATGTTCCCACCCCACCCACCCCTCCAGAACTCTAAACTCCCTGGAACCTCCAGTCTCTTGAGGGTTAGGTGCATCTTCTGTGACTGAACCCAGACCCGGAAGTCCTCTGTAGTATATGTGTTGGAGGCCTCATTACATCAACTGGTGTATGCTGCCTGGTTGGTGATCCAGTGTCTAAGAGATCTCAGGGGTCCAAGGTAATTGAGAATGCTGGTCCTCCTACAGGGTCGCCCTCCTTAGTTTCCTCCAGCTTTTCCCTAATCTGACTCTTTCTGCTGCTTGTTGGGTGTTTTGGAGAGCAGTTATGGTTGGTCCCATTTTGTGAACGCCCTGTAGCCTCAGTAATGGTATCATCCTCCTGTTGAGCTGGATCTGCCTTTGGGCGAATTTCTTTTCCTCAGACTCTTCTCCCTTTCCATCCCTGCATTTCTTTCAGACAGGAAGAATTATGGGTCAGAGCTTTGGCTGTGGGATAGCAACCCAATCCCTCACTTGAGGGATTGATTGCCCTGTCTTTTTGCTGGAGATGGATTCAATAAGGTCCCTCTTCCCCCCTTGTGTTCTGAGTCTCTCAATTCCCAGGTCTCTGGTTCATTCTAGAGGGTCCTCCCAACCTCCTTCCTCCCAAGAATGTGTCCATTCTTTCTGCTGGCCCTTGGGGCTTCAGTCCTTTTTCCCCATCCAATACCTGATCATTTTCCCCTCTCCCCTCCCCCATCCCCTTCCCCCACTCCGTGGTTGTTTTCTTCTACCTCCCAAGTGGAACTGAGGCATCCTCACTTGGGCCCTTCTTTTTGAGTCCTGTGGACTCTTGGGTATTCTGTACGGTTTTGTTTGTTTGTTTGTTTGTTTCTTTCTTTCTTTTTGTTTTTGCTAATATCCACGTATCAGGGAGAACATACCGTGCATGTCCTTTTGGGTCTTAGTTACCTCACTCAGGATGATATTTTCTAGTTCTATCCATTTGCCTGAAAAACTCAGGACATCCTCCTTCTTAATAGCTGATTAGTATTCCATTGTGTAAATGAACCACATTTTCTATATCCATTCTTCTGTCATGGGACATCTGGATTGTTTCTAGCTTCTGGCTATCACAAATAAGGCCACTATGAACATAGTGGAAGATGTGTTCCTGTGGCATGATGGGGCATCTTTTGGGTATATTCCCAAGAGTGGTATTGCTGGGTTTTTAGGTAGGTCTATTTCCAATTTTCTAAGGAACCTCCAAGTTGATTTCCAGAGTGATCGTACCCCACCAACTTGTAATCCCACCAGCAATGGAGGAGTGTTCCCCTTTCTACACATCCTCGCCAACCTGTGCTGTCACCTGAGGTTTTGATCTTAGCCATCTGACTGGTGTAAGGTGGGCTCTCAGGGTCATCTTGATTTGCATTTCTCTGATCACTAAGGACTTCGAACATTTCTTCAGGTGCTTCTCAGCCATTCCAGATTCCTCTATTGTAAATTCACGGTTTGGTTGTATACCCCATTTTTTGATTGGGTTGTTTGATCTTGTGGTGGTTAGAGTTCTTTATATATTTTGGATATTAGCCCTCTATCAGATGTGAGGTAAGTGAAACTTCTTTCAATCTGTAGAATACCGATTTGTCCTATTGACGATGTTCTTTGCCTTACAGAAGCTTTCTAGTTTTATGAGGTTCCATTTATCAATTCTTGATCTTAGAGCATGAGCCATTGGAGGAAATTTTCCCCTGTTCCAATGAGTTCAAAGTTCTTTGCTGCTTTCTCTTCTATTAGATTCAGTGTATCTGGTTTTTATATCGATGACCTTGATCCACTTGGACTTGGGCTTTGTGTATGATGATAAATATGGGTCTATTTTCATTTTTCTACATACAGACAGCCAGTTAGAACAGCACCATTTATTGAAGATGTTTTCTTTTTTCCATTGTATATTTTTTTACTTCTATGTCAAAGATCAAATGTGTGCAAGTGTGTGGTTTTATTTCTGGGTCTTCGATTCTATTCCATTGATCAACCTGTCTGTCTCTGTACCAATACTATGGAGTTTTTATGACTATTGCTCTGTAGTAGAGCTTGAGGTCAGGGATGGTAACTCCCCCAGCCGTTCTTTTATTGTTAAGAATTGGTTTTGCTATTCTGGGTTTTTGCCTTTCCAGATGAATTTAAGAATTTCCATGTCTTTGAAGAATTGTGTTACGATTTTGATGGGGATTGCATTGACTCTGTAGATTGCCTCTAGTAGGATGTCCATTTTACTATGCTAATTCTGCCAATCCACGAGCATAGGAGATCTCTCCATTTTCTGATATTGTCTTCATACAGTCCAGTAGTAGGGAAGTACAATAAAATATGAATGTTCATGTCTGTTTTACCAACAAGATTTTAAGTGACTAGTTGGCATCTGGGTAAATGAATGTAGTCTTAAGCATAAACAGCAAGTAACAAGGGCCCCTATATTTCAATAGCCTATTGAGTCACTGTAGCTGTCTGCTCAGACAGCCAGTGCATCCAAGGAAAAGGAAGCTTTTGGGGTCCATTAATCTCCACATTTTATATTTTAAAAATCTCTAGATCAGTTCCATATTTCCTTTTCTGCTGTAACTCCCTGTATCCTGGGTCCACCTTAATCAGTTACCATCCATAGAGCTAAGGGAATATTAATGAGAAAAGCATCTAAAGTTGCTCAGGACAATAGCATCTCACAGAGGGTTTGGACTCCAGAAGTAAAGGGAACAGCAAAATTGCTATGGGGAGCCTGGGGTAAAAGTATGTGGGCAACCAAAAATGGACTTGGAATTATTTTTTCCTCTTCTTTTTTCTTGGAGGAGGTGACAAGCATGGATGAGAATCAGCCTGAGAGAACTGGGAAGTGAATGTGATCAGGGTGCTTTATGTAAAATCAAAAAAAAAAAACAATGAAAATGTTCTACTGGGTAAAAAACAAAAGTGCTTCAAACAGCTCTCTGGAAACAGGGTCAAATATGTATATAAGAAAGGAGTAAGAACCTCCCTTAATGGGCTTCTCTCTCTTTATCTATCTTTATCTCTATCTAAGCATTTCACATCTACTATCATAAGGAAGAGAGGTAGATAGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGTAGGGCCTGAGTGCCAAGTATAATAGATCATAGTAACAGATGCTTCAAAGACAGTATTTCTAACATTCAAGGTCCTTGTCCTCTCTATAGCATCTCTTTCAGCCTCTTTTTCCCTTCTTCCCTCCTTCTTTTTACACCCTCCCATCTCAATTTCATCTGCCCCGAATAGGATTTTCATCAAGGATGGTGGTTTTTCTTTCCACCTCTGGAAACATCAGGTATGTGGAAACACATCTAGAACACCAGAGATGTTTAGAAACAAATATTCAGAACTCAGCAGCCCACAGCCTATTGACTGCTGTGTTCACCATATAGTGTTCACCAGGATTTCTTTTCATTTCAG
Seq C2 exon
TCTCACAGATTTTTGGAAGAAGTGATGAAAGCTTCGTTCCCACAAGGAGCTCTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026306:ENSRNOT00000033265:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]