HsaINT0036269 @ hg19
Intron Retention
Gene
ENSG00000090269 | CLEC5A
Description
NA
Coordinates
chr7:141643696-141645200:-
Coord C1 exon
chr7:141645141-141645200
Coord A exon
chr7:141643765-141645140
Coord C2 exon
chr7:141643696-141643764
Length
1376 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
AGGTTTACTTTTCACTTTAGTCT
3' ss Score
5.12
Exon sequences
Seq C1 exon
TCCCACAGATTTTTAACAAAAGTAACGATGGTTTCACCACCACCAGGAGCTATGGAACAG
Seq A exon
GTAATCTGCATGGTGGTAAATCTTCTCCCCATCCTCCTGCTACTTCTATGCTGAATTCCTAGAGACCTTCCACACAGCCTCCTTTCCCAAGAAATTCTTTTGTACAAAGGGTCCATAAAGATCTTCTAATTAATTCCCTTTCTTTTACATATGAGAAAACCAAGAGCAGACTGAGGGAAATTTCTGATCCTTAGTTTTTCTCCTGGATATGGGGATGATTTATATCTAATCATTGTAATAGAATGTGAAAGTGCTTAATAGCCAGTAGCTATGGGAGATAGAGAGATGAGTGGGGCATGGTTCTCCTCTCCCGATTAAACCAGCTTCCTTCTGAAGCCTTTCCCAACAACATCCTCTCACTTCCTCTTAAGACACCTATTACTACTGACATCGTTAGGAGAAAGACCGTTTCTCATTTATCTTAGTATCAACAGAGGCAACCCAATACAGTGAGCTGTATGGAGAAAATACTCATAAAATATGTATTGAGTCCTTAAGTTATAATCTCAAAGTAGTTTCTGATGAAAACCAGGCTATTACATCTTAGAGTCTATAAACGGGGTACTGAAATAAAAAGTGAATGCCAATTTGTTTCATTAAGATAAATGTAAGTAACTAATTTGATGTCAGAGTAAAGTGGTCTTCAACCACAATGGACAAATAACTGGCAGCCCAATTAGATGTTTGACCAGCCTCTGAAGCCACTGCGGCTGCCTGCTCAGACAGCCAGTGTTCCCAGGGAAATGAGGCCCCTATATGGATTTCTAGAAATGAATGGACCCTTCCCTGCTTATAGAAAATCTCCCTAAAGTTCACCTGCTTCCTTGTCTGATAATATCCCCTTGGCCCTGAAATTTTGTTCCAATTAGCTTCAATCCTTAGAGCTAATACAGTGCTGATGAGAAAAGAGTCCCAGAGTTGCCCAGGATTATGAATTTTCATACTGAATCTGGGACACCAGAAGTAGAAAGAACAGCAAAGATGCTGTGTGGAGCCTGGGCGAGAAGTACTCCAAACAGTCCTTTGGAGAAAACACTGTCAAAGGTTTATATACGATAGGAGTGTGAGAGTTTCTCTCTGATACTAAATTCCTCCATTACTTTTCCTTTCTTCTGTTCTTTTTCTCAGGATTTGATGCCTATGGCTACATCAAAAAAAGGAGACATGAAATAGGATTTGGGTGTCAAGTTGACAAATAATGATAGTAGTTAGATGGAAGGCTCAAAGAAAGAAATTATTTGAAATGTTCTAGCTCAGAGTGGCCAAGAGCTTCTTGTCATCTCCATGATTCAGAGTCACACAGCCCATACTCTGATGTTTCTGTTTCTGTGTTGTATTCATCATACCATAACCTTTAGGTTTACTTTTCACTTTAG
Seq C2 exon
TCTCACAGATTTTTGGGAGCAGTTCCCCAAGTCCCAACGGCTTCATTACCACAAGGAGCTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090269-CLEC5A:NM_013252:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)