MmuINT0037263 @ mm9
Intron Retention
Gene
ENSMUSG00000029915 | Clec5a
Description
C-type lectin domain family 5, member a [Source:MGI Symbol;Acc:MGI:1345151]
Coordinates
chr6:40532234-40534429:-
Coord C1 exon
chr6:40534355-40534429
Coord A exon
chr6:40532294-40534354
Coord C2 exon
chr6:40532234-40532293
Length
2061 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATC
5' ss Score
4.14
3' ss Seq
AGGATTTCTTTTCATTTCAGTCT
3' ss Score
6.1
Exon sequences
Seq C1 exon
TCCCACAGGTTTTTGGCAAAAGTAATGATGGCTTCGTCCCCACGGAGAGCTACGGAACCACTAGTGTGCAGAATG
Seq A exon
GTAATCTCACTAGCATCCAGCTTCTATGTCCTGAATTCTAACAGTTCCTATGAATTTGTATACAGATGCTACACCAAGGTCCTGTTCTCCTTTACAAGTGTGAAAATGAACAGAAAACTCATTGATCACTGTATCTTCCTGATTTTTCCTCTATTGGTACTAAGGATCAAATTCAGGGCCTTGCTCATAGGAAGCACAAAGTCTAGTACTGAACTACACCCACCTCAACCCCTGTATGGAATTTATGATCCTCAGTTTTCCTCCTGGGCTTGAGAACGATTTGTGTGGGACTACTATAATATATTGTAAGTGAATTTCATGGATTCTTACAAGGAATTGTTACAAACAAAATTCTATCCAGGTGTGGTGGCCCAAACCTTTAATCCCAGCACTCAAGAGGCGAAGGCAGGTAGATCTCTGAGTTTAAGGCCAGCCTGGTCTAAAGAGTGAGTTCCGCTGGGAGTGGTGGCGCAGGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTGGAAAATAGAAAAGAAACAAAATTCTAGCATTAGAAGATGGTTCACCTGGTAAAGTGAATACTTGAATGAGGACCTGAGCATATATCTCCAGCACACAAGTGAAAGTCAAGTCTTTGCCATGTGTGTCTGTAACAGCAAGACTGGTGGATGGAGACAGAGCTGGGAGAATCCCTGGTACTCGTTGGCCAGTCCGTGTAGTTGAATTAATGAACTCCAGTTTCATAAAGAGATCCTGCCTTAATACATGAGATGGACAAAGATTGAAGAAGGCACCCAGTGTCAGTCACTGGTCCCCTCACACATGAATGTAAACACATCTTCACACACATGTACATACATCCACTCAGGCATGTACATACAATGCATACACACAAACACATGCACATACATGCTCACACACAGACACAAACACACACACACACACACAGAGACACACACACACACACAAAAGAATTCATGTTCCACAAAAAAAGGGGGGCTAGGCATCATTTTGTGAACTAAAAATTATGCTAGACTCACCATGGGATAAGAATAAAAACAGATTGGTAATCAAGCCTCATTTATAACACAAAAAATTTAATGCCACATGTTTCACATACAGAGGCCATGGGACTTCTAATCCTACCTCTCTTCTATTTGATTTATTCATTTTTATGTGTGTGAATGATTTATCCTCATGTATATATGTGCACCATGTGCATGGGCTGCCTATGGTTGCCAGGACACTGTATCCTCTGGAACCAAAGTTACAAGTGTTGTGAGCCAACATGGGGATGCTGGGAACTATGCCATCGCTCCAGCCCCAAGCCCACTCTTCATGCAGCTTTCTGCAAGGACTCCCTGCCACTGCCTCTTAAGACATGGGCTACAATTGACATCTTTAGGACCAAAGAAGAAATTTCTAACTTATCAAAAATGGACTATTATGATATCAAAGTCTCTGAGCTAAGGAGTACAATAAAATATGAATGCTCATGCCTGTTTTAACAATAAGAGTTTAAGTGACTAGTTGGCATCTGGGTAAATGAAAGTAGTCTTAAGCATAAAGAACAAATAACCAGGGCCCCTGAGCAGACTTTCAATAGCCTGTGGAGCCACTGAAACTGTCTGCTCAGACAGCTGGTGCATCCAAGAGAAAGGAGCCCCTTAGGGGCCATTAATCTCCACAGTTTGTATTTTAAAGACAGTATTTTTGACAATTCTAGTTCAGAGTGGTCAAGGCCCTTTTCCTCTCCATAGTATCTCTTTCAGCTTCTTCTTCTCTTCTTCCCTCCTTCTTTCTGCACCTTCCCATCTCAAATTTCCCTGCCCCAAATAGGATTTTCATCAAGGATAGTGTTTTTTCTTTCTACCTCTGGATCGTCTAGAATATCAGGGGTGTTTAGAAACAAATACTCAAAATTCAGCAGCCCACAGCCTAATGACTGCTGTGTTCACTATATAGTAGCCATCAGGATTTCTTTTCATTTCAG
Seq C2 exon
TCTCACAGATCTTTGGGAGAAATGACGAAAGTACCATGCCTACAAGGAGCTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029915-Clec5a:NM_001038604:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: