BtaINT0039232 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020453 | CLEC5A
Description
C-type lectin domain family 5, member A [Source:HGNC Symbol;Acc:HGNC:2054]
Coordinates
chr4:106066952-106069315:-
Coord C1 exon
chr4:106069256-106069315
Coord A exon
chr4:106067012-106069255
Coord C2 exon
chr4:106066952-106067011
Length
2244 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
AGGTTTTCTTTTCATTTCAGTCC
3' ss Score
7.55
Exon sequences
Seq C1 exon
TCCCACAGATTTTTGGTGAAAATAATGCCATCTTCATTCCCACAGAGAGCTCTGCAACAG
Seq A exon
GTAATGTACATGAAAATAACCTCCTCTCCCCTCTCCAGGTTCCTCTGTGCTTAAGTCTTAGAGACCTTTCTCAAAGCCTCCTTCCCCTAGACATTCTTCTGTAGAATGAGTTCATAAAAAGCTGCTAATTGTTATAAGATGAATGAGTTCCAAAACTCCTATGTACCACATAGTGACTGTAAGTACTAACAGTGTATTGTATGCAAGGAAGTTGCTAGAAGAGTAGATGCTCAATGTTCTCCCGACACACAAAAAAGATGATTATGCGAGGTGATGGAGGAGTTAACTGACCTTATCGTGTTGATAATTTTGCAATAAGTACATGTATGAGATCATCATGTTGTATATTTAAACTTATACAATGTTATGTGTGAATATCTCAATAAAGCTGGAAAAGTAAAATAAATGCAGCACACCCAGAAAAACAAATATCTTCCAATTTATTTTCTTACTTTTAGAGATGAGAAACCAAGACTAGACTTGGTGAAGTTTCAGATCCTGTTTTCCTCTTTGGAATGAGGATGGTTTGTGTATAACTAGTGTAATGTGATGTGAAAGTACTTTATAAACCTTGTCATTTAAAGAATTGTTTAAAGAAACCCATGCCCCACAAAAACCATCAAAAATTATATTCAACGCCTTTTTTTGGTGCCAAGCAGTATGCTAGACCAAACACAGAAGGAGATTGAAAACAGGAGAAATTAGTCAACTATCATCTACAAAGCACAAAGTCCAGTGCCAGAAGCTATGGGGGATAAAGACATGTCAGGCATGGCTCTCCTTATGAACCCCACCTCCTTTTGAAGCTTTTCCAAGGATCTCCTTCTCACTTGCTCTTAAGACAAACCTACTACTAACCACATCTTTATCAGAAAGATAATTTCTTCTTCATTTTTGTAGCAACTGAGGCACCCAGTAAGTACAGTGAGCCAAAAGGAGGAAACGCTGAAATGCTCATGAAATACATATACAGTTCTGTTCAGTTATAATCCCCAAGTCGATTCTAATGAAAACCAGGTTTTGCTATATTACAAAGAGCCTTTGAGCAGGGGACTGAAATAAAAAGTGAATGCTAACTTGCATGTTTTATATATGATTGTAAGTAGCTAACTGGCATCTGGGTAAATTAAACTGGTCTTCAACCACCATGGACAAACAACTGGTCCATTAAGGAAAAGTCTGACTGACCTCTGGAGCCACTGTAACTACACGCTCCAACAGCCAGTGTTCCCCAAAAATAATGAGGCCTCTTGGAGGCCTACTGATTCTCCTTTTATGTTAATATAAAGAGATGAATGGACTCTTCTCTGCCCACAGGAAATCTCTGGGGACTCCCCTGGCAGTCCAGTGGTTAAGACTCTGTGCTTCTGCTGAGGGGGTGCATGGATTCAACCCCTGGTCAAGGAAATAAGATCCCATATGCCATGTGGCATAGCCAAAAAATAAAAGAGAAACCTCTAGAATGTCCATCTGCCTCCTTGTCTGCCAACATCTTCTAGTTCTGAATCTTGTTCCAGTTAGCACAGTCCTTAGAGCTGATAATTGCTGATGAGAGAGAGTCAAGAGCTGCCCATCAGGACTATGGGTTTTCACATAGGGTTTAAGGCACCAGCAATGGAGAGAGCAGCAAAGGTGCTCTGTGGAGCCTGGGGAGAAGCACTCCAAACAGCTCTTTGGGGAAAACACTGTACAAGGTATAGATGAGAAAGAACAGGGAGGTTTCCTTTCTGGTACTGAATGCATCTATTCCTCTTCCTTTCTCCTGCTCTTTTTCTTGGCATTTCACACTGTCAAAAGTATATGTGAGTGTGTGCCAAGTCATTTCAGTCGTGTCCAACTCTTTGCAACCCTATGGATTGTAGCCCACCAGGCTCCTCTGTCCATGGGGATTCTCTAGGCAAGAATACTGGAGTGGCTTGCCATGCCCTCCTCCAGAGCATCTTCCAAATCCAGGGATCTAACTTGCATCTCTTATATCTCCTGCATTATCAGGCAGGTTCTTTACCACTAGAGCCACCTGGGAACCCCGTCAAAGGTATATATGAGACACCAAGAAGACACCTGAGGCAGGTCAAATAATAGTAGTAGTTGGATGGATGTTCCAAAGGGAAAAAACCTGAAAAATTCCAACACAGAGTGGCAAAGAGTCCCTTGTTAATTCCACTGTCCATTCTGGACATCTGCTGTGACATTTGTGTGTCACACCCATCATCCAGCTATCTTCAGGTTTTCTTTTCATTTCAG
Seq C2 exon
TCCCACAGATTTTGGGGAATGGCACTGTCAGCTTCACTCCAACAGAGAGCTACGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020453:ENSBTAT00000027255:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]