HsaEX6010932 @ hg38
Exon Skipping
Gene
ENSG00000258227 | CLEC5A
Description
C-type lectin domain family 5 member A [Source:HGNC Symbol;Acc:HGNC:2054]
Coordinates
chr7:141945341-141946983:-
Coord C1 exon
chr7:141946807-141946983
Coord A exon
chr7:141946214-141946312
Coord C2 exon
chr7:141945341-141945400
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTCTAATCTTCACAGGCC
3' ss Score
9.6
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
CAGGAAGAGGTATTTCTTGGGGATGCTACCAAGGCAGAGACTGTGAAGAAGGAAGAACGTTGCTTGGGCAAAAGGAGCATATTCTCAGGAGACGGGGCCCCTGCCTGCCACACCAAGCATTAGGCCACCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCAGGGAGAAAGAG
Seq A exon
GCCCCTGCAGCTCCTTCATCATGAACTGGCACATGATCATCTCTGGGCTTATTGTGGTAGTGCTTAAAGTTGTTGGAATGACCTTATTTCTACTTTATT
Seq C2 exon
TCCCACAGATTTTTAACAAAAGTAACGATGGTTTCACCACCACCAGGAGCTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000258227-'0-1,'0-0,1-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0005916=Lectin_C=PU(12.3=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGGGCAAAAGGAGCATA
R:
TAGCTCCTGGTGGTGGTGAAA
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains