HsaINT1007825 @ hg38
Intron Retention
Gene
ENSG00000258227 | CLEC5A
Description
C-type lectin domain family 5 member A [Source:HGNC Symbol;Acc:HGNC:2054]
Coordinates
chr7:141945341-141946312:-
Coord C1 exon
chr7:141946214-141946312
Coord A exon
chr7:141945401-141946213
Coord C2 exon
chr7:141945341-141945400
Length
813 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
ACAGCTGATTTTCTTTTCAGTCC
3' ss Score
7.51
Exon sequences
Seq C1 exon
GCCCCTGCAGCTCCTTCATCATGAACTGGCACATGATCATCTCTGGGCTTATTGTGGTAGTGCTTAAAGTTGTTGGAATGACCTTATTTCTACTTTATT
Seq A exon
GTGAGTATTTGAGCAACCTCTTGCCCCAGACTTCATGTTGTCTTGCTCATTGACTCTTCTCTCAGAATGCATGGTTGTGTGTAAAGGTTACATATCCAAGTCTTTCCACCTGAGACTAACTGACCCAACCTGAGGTCAATTGGCAATGCCTTTCTCACTCCCCAGCACACACAGTGGCCCAGGCTCCTTGGTCTACCTTGGAGATATAGAACTTACCAGTTTCTGATGGTTAGAACGCCACGCAAAGCTTTTGCTAGTAGAGTATTATTTGGGTGATCTCAGCTGAAGTACTTGGCAGCGCTTGTTATTGTTGGCAAAATCTAAAATACAGCTCCAGTTCAACCCAATGACAAGGCCATGGTAAGAGCTGAAGTATAATGTAACAGGATTTAACTGAGAAAGAAATTTCTCTTTGTATACATATAAATTAATTCATCCAAATGCCTAGTTAAAGAAGCCTCCTATGAAAGGATTTTACTGCAATCAGAAACTAGAATCTTCTCTAGCCCCAGAAGCCAGTAGGGAAAATAAATGAGGAAGGAAACGTGAGTGGGAGGCAGTAGTTAGCTAAGAGGTGTCTTCCTCATGATGCAATCTGAAGGTGCAATTCCTATCATGTCAGACAGCAGGACAGAAATATGAATAAGGGAACGTATTCACAAAACCACATTTATGCATCTTCACTGAGTCAGAGAGTTCAGTATTTCCCACTAATAGTCACAGTACCCTAGCAGCCCCTGTGCTGATACTTGTTTGTCATATTCATCATGCAGTCACATTTGGGGCTGAGCCAACAGCTGATTTTCTTTTCAG
Seq C2 exon
TCCCACAGATTTTTAACAAAAGTAACGATGGTTTCACCACCACCAGGAGCTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000258227:ENST00000546910:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(12.3=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains