Special

BtaINT0039231 @ bosTau6

Intron Retention

Gene
Description
C-type lectin domain family 5, member A [Source:HGNC Symbol;Acc:HGNC:2054]
Coordinates
chr4:106069256-106070381:-
Coord C1 exon
chr4:106070303-106070381
Coord A exon
chr4:106069316-106070302
Coord C2 exon
chr4:106069256-106069315
Length
987 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
ACAGCTGATTTTCTTTGCAGTCC
3' ss Score
7.59
Exon sequences
Seq C1 exon
ATGAACTGGCATATGATAATCTCTGCGCTTATAGTAGTGGTGCTTAAGATTGTTGGAATGACCTTATTTCTGCTTTATT
Seq A exon
GTGAGTATCTGATCAACCTCTTACCACAACTAAGATCGTACTCTTCTTGACTCTTCCCTTAGGATGCAGGGTTGAATATAAAGGTTAAATGCTCAAGACTTTCCAGCTGAGGGAAATTGATGGCCCTTCTCATTCCCAGACACACAATGAACAGGGTTCCTTGGTCTACCTTGGAGATACAAAACAGAGCAGCGTCTGATGATTAGACTTCCACACAAAATTTTTGCCACTAGAGTATTCATTGGGTAATCTGAACTGAAGTACTCTGCAGTGCTTGTTATAGTTGCTAATTTGAAAATACAGCTCCAGTCCAACCCAATGATAAGCTGTGGGACATGCTAAGTCACTTCAGTTGTGTCTGACTCTTTGCAACCCCATGGACTGTGACCCACCAGACTCCTCTGTTCGTGGGGATTCTCCAGCAAGAATATTGGAGTGGATTGCCTCTCCAATGCCCTCCTCCAGGGGATCTTCCCAACCCAGGAATCTAACTCAGGTCTTTTAAATCCCTTGCATTAGCAGGTAGGTCCTGCCACCTGGAGCTACATTAAGGGTTAATGGGGTTTTACTGGGCAAGATATTTTCCTTTATGTACACAGAGACTAATTCATCCAAATGTTCAGAAAAAGAGGACTCATATCAAAAGATTTTACCACAGTTGCAGCAAGTAAAATCTTCTCCAGCCTCAGAAGCCTATGGGGAAGATAAATGAGGAAGGAAATATGATTTGGAGGCAACAGTTGGGTAAGAGATATCGACCATATGGCCCAATCTCAAGGTGCAGTTTCTACCACATAAGAGAGCAGGATGAGAATGCGTGAATATATCCACAGGAAACATATGCCCATCTTGGCTGACCTGAGCCAGCGAGCTCAACCTGTCCCACTGATAGGCGCTATGTCCCACCAGCCCCACAGTAACGTCTGTCTGTAACACTCACTGCACAGCCACCTTTGAGGCTGAGTCAACAGCTGATTTTCTTTGCAG
Seq C2 exon
TCCCACAGATTTTTGGTGAAAATAATGCCATCTTCATTCCCACAGAGAGCTCTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020453:ENSBTAT00000027255:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion (1st CDS intron)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]