HsaINT0036268 @ hg19
Intron Retention
Gene
ENSG00000090269 | CLEC5A
Description
NA
Coordinates
chr7:141645141-141646112:-
Coord C1 exon
chr7:141646014-141646112
Coord A exon
chr7:141645201-141646013
Coord C2 exon
chr7:141645141-141645200
Length
813 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
ACAGCTGATTTTCTTTTCAGTCC
3' ss Score
7.51
Exon sequences
Seq C1 exon
GCCCCTGCAGCTCCTTCATCATGAACTGGCACATGATCATCTCTGGGCTTATTGTGGTAGTGCTTAAAGTTGTTGGAATGACCTTATTTCTACTTTATT
Seq A exon
GTGAGTATTTGAGCAACCTCTTGCCCCAGACTTCATGTTGTCTTGCTCATTGACTCTTCTCTCAGAATGCATGGTTGTGTGTAAAGGTTACATATCCAAGTCTTTCCACCTGAGACTAACTGACCCAACCTGAGGTCAATTGGCAATGCCTTTCTCACTCCCCAGCACACACAGTGGCCCAGGCTCCTTGGTCTACCTTGGAGATATAGAACTTACCAGTTTCTGATGGTTAGAACGCCACGCAAAGCTTTTGCTAGTAGAGTATTATTTGGGTGATCTCAGCTGAAGTACTTGGCAGCGCTTGTTATTGTTGGCAAAATCTAAAATACAGCTCCAGTTCAACCCAATGACAAGGCCATGGTAAGAGCTGAAGTATAATGTAACAGGATTTAACTGAGAAAGAAATTTCTCTTTGTATACATATAAATTAATTCATCCAAATGCCTAGTTAAAGAAGCCTCCTATGAAAGGATTTTACTGCAATCAGAAACTAGAATCTTCTCTAGCCCCAGAAGCCAGTAGGGAAAATAAATGAGGAAGGAAACGTGAGTGGGAGGCAGTAGTTAGCTAAGAGGTGTCTTCCTCATGATGCAATCTGAAGGTGCAATTCCTATCATGTCAGACAGCAGGACAGAAATATGAATAAGGGAACGTATTCACAAAACCACATTTATGCATCTTCACTGAGTCAGAGAGTTCAGTATTTCCCACTAATAGTCACAGTACCCTAGCAGCCCCTGTGCTGATACTTGTTTGTCATATTCATCATGCAGTCACATTTGGGGCTGAGCCAACAGCTGATTTTCTTTTCAG
Seq C2 exon
TCCCACAGATTTTTAACAAAAGTAACGATGGTTTCACCACCACCAGGAGCTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090269-CLEC5A:NM_013252:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)