RnoEX6013281 @ rn6
Exon Skipping
Gene
ENSRNOG00000026306 | Clec5a
Description
C-type lectin domain containing 5A [Source:RGD Symbol;Acc:1584755]
Coordinates
chr4:68818431-68819928:-
Coord C1 exon
chr4:68819733-68819928
Coord A exon
chr4:68819232-68819330
Coord C2 exon
chr4:68818431-68818505
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTTGCTCTTATCCCCACAGATC
3' ss Score
12.84
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCCAAGAGCACTGAACAGGAAGAAGTGTTTGCTTGGAGATGCTGCTCAGAGGAGAGGTTGTGAATAAGGACATTACCCATTACCCAAGCAGGAGCGGGCATTCAGAAGAAAAGGAACCCTGCCCACCACACCAAATATTAACTTATCAAAAAGACTCCTATCTGTATGCCAACCAAGACTCACAGGAAGAGATCAG
Seq A exon
ATCCCTGAACCCCCATCATCATGAACTGGCACATGACCATCTCAGCTCTTATCGTAGTAGTGATCAAAGTTGTTGGAATGACCTTTTTTCTGCTGTACT
Seq C2 exon
TCCCACAGGTTTTTGGCAAAAGTAGTGATGGCTTCATCCCCACGGAGAGCTACGGAACCACTAATGTGCAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026306-'0-1,'0-0,1-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCGGGCATTCAGAAGAAA
R:
TAGTGGTTCCGTAGCTCTCCG
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]