MmuEX6003928 @ mm9
Exon Skipping
Gene
ENSMUSG00000029915 | Clec5a
Description
C-type lectin domain family 5, member a [Source:MGI Symbol;Acc:MGI:1345151]
Coordinates
chr6:40534355-40535802:-
Coord C1 exon
chr6:40535646-40535802
Coord A exon
chr6:40535149-40535247
Coord C2 exon
chr6:40534355-40534429
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTCGCTCTCATCCCCACAGATC
3' ss Score
13.1
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
TGCTTGGAGATGCTGCTAAAACAGAGAGGCTGTGAACAAGGACATTACCGAGCAGGAGCATACATTCAGAAGACAAGGAGCCCTGCTCGCTGCACCGAATATCTTATCAAAAAGACTCCTATCTGTATGCCAACCCAGACTTCCAGAAAGAGATCAG
Seq A exon
ATCCCTGAATCCCCATCATCATGAACTGGCACATGATCATCTCGGGGCTTATCGTAGTAGTGATCAAAGTTGTTGGAATGACCTTTTTTCTGCTGTATT
Seq C2 exon
TCCCACAGGTTTTTGGCAAAAGTAATGATGGCTTCGTCCCCACGGAGAGCTACGGAACCACTAGTGTGCAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029915-'0-1,'0-0,1-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGCAGGAGCATACATTC
R:
GCACACTAGTGGTTCCGTAGC
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: