Special

MmuEX6003928 @ mm10

Exon Skipping

Gene
Description
C-type lectin domain family 5, member a [Source:MGI Symbol;Acc:MGI:1345151]
Coordinates
chr6:40582235-40585803:-
Coord C1 exon
chr6:40585647-40585803
Coord A exon
chr6:40585150-40585248
Coord C2 exon
chr6:40582235-40582294
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTCGCTCTCATCCCCACAGATC
3' ss Score
13.1
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
TGCTTGGAGATGCTGCTAAAACAGAGAGGCTGTGAACAAGGACATTACCGAGCAGGAGCATACATTCAGAAGACAAGGAGCCCTGCTCGCTGCACCGAATATCTTATCAAAAAGACTCCTATCTGTATGCCAACCCAGACTTCCAGAAAGAGATCAG
Seq A exon
ATCCCTGAATCCCCATCATCATGAACTGGCACATGATCATCTCGGGGCTTATCGTAGTAGTGATCAAAGTTGTTGGAATGACCTTTTTTCTGCTGTATT
Seq C2 exon
TCTCACAGATCTTTGGGAGAAATGACGAAAGTACCATGCCTACAAGGAGCTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029915-'0-3,'0-0,1-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATTACCGAGCAGGAGCAT
R:
AGCTCCTTGTAGGCATGGTACT
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types