RnoEX0021736 @ rn6
Exon Skipping
Gene
ENSRNOG00000026306 | Clec5a
Description
C-type lectin domain containing 5A [Source:RGD Symbol;Acc:1584755]
Coordinates
chr4:68814444-68819330:-
Coord C1 exon
chr4:68819232-68819330
Coord A exon
chr4:68818431-68818505
Coord C2 exon
chr4:68814444-68814503
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTAGCTGGTTTTCTTTGCAGTCC
3' ss Score
7.6
5' ss Seq
ATGGTAATC
5' ss Score
4.14
Exon sequences
Seq C1 exon
ATCCCTGAACCCCCATCATCATGAACTGGCACATGACCATCTCAGCTCTTATCGTAGTAGTGATCAAAGTTGTTGGAATGACCTTTTTTCTGCTGTACT
Seq A exon
TCCCACAGGTTTTTGGCAAAAGTAGTGATGGCTTCATCCCCACGGAGAGCTACGGAACCACTAATGTGCAGAATG
Seq C2 exon
TCTCACAGATTTTTGGAAGAAGTGATGAAAGCTTCGTTCCCACAAGGAGCTCTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026306_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTGAACCCCCATCATCA
R:
CTGTTCCAGAGCTCCTTGTGG
Band lengths:
159-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]