BtaEX6030017 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPG1]
Coordinates
chr6:14189834-14193657:+
Coord C1 exon
chr6:14189834-14189884
Coord A exon
chr6:14191719-14191805
Coord C2 exon
chr6:14193472-14193657
Length
87 bp
Sequences
Splice sites
3' ss Seq
TAATTGATATTTTATCCTAGTTC
3' ss Score
4.3
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATGATAAAAGAAAATGAAGCTGAACCAAGTGAATCACGTCAGTCTTTGCAG
Seq A exon
TTCATTCCCTTGGGCACTGAAGAAGAGACTGCTTTTCTAGCTGTTATTCCTAAACAAATGGAGAGAGAAACCTGTAATGACCCCAAG
Seq C2 exon
CCTGTTGAGTTTCAAGGGCACCAAGTGAAAGGCTCCGCATCTAGCGCTGTGATGGTCAGAGGACACAGCTCACAGGTTGAATGCAGTCAGCTTTCGGATAGCACTGTGTATGGAAGCTGCACGACAAACACTTGTTTTTTGACACCAGAGTTGCCTAGCACTCGTATGCAGATGGGCTTCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026936-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.621 C2=0.258
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAACCAAGTGAATCACGT
R:
ACAAGTGTTTGTCGTGCAGCT
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]