HsaEX0011002 @ hg38
Exon Skipping
Gene
ENSG00000138658 | ZGRF1
Description
zinc finger GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr4:112589630-112609429:-
Coord C1 exon
chr4:112609379-112609429
Coord A exon
chr4:112606008-112606091
Coord C2 exon
chr4:112589630-112589874
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTATTCATATTTTATCCTAGTTC
3' ss Score
6.97
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATACTAAAAGAAGATGAAGTTGAACTAAGTGAACCACTTCAGTCTGTGCAG
Seq A exon
TTCTCTTCCTCGGGAAGTAAAGAAGAGACTGCTTTTCAAGCTGTTATTCCTAAACAAATAGAGAGAAAAACCTGTGACCCTAAG
Seq C2 exon
GTGACATCACCAGAAGAAAACATCTCTACATTGAGCCCTGTTTCTACCTTTTCTTTGAACTCAAGAGATGAAGACTTCATGGTAGAATTCTCTGAGACGTCCCTGAAAGCAAGAACTTTACCTGATGATCTTCATTTTCTCAACTTGGAGGGTAGTCGTTACCACATTGCTCTAATATCTGTCTATTCATTTAAGATGAAGTTTTTTATTTGAGAGATTATTACACTAAATATATCTTAGAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658_MULTIEX3-3/8=1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=0.397 C2=0.099
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCACTTCAGTCTGTGCA
R:
ACGACTACCCTCCAAGTTGAGA
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development