HsaEX0010993 @ hg38
Exon Skipping
Gene
ENSG00000138658 | ZGRF1
Description
zinc finger GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr4:112585541-112606091:-
Coord C1 exon
chr4:112606008-112606091
Coord A exon
chr4:112589724-112589874
Coord C2 exon
chr4:112585541-112585725
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGATTCTTCTTTCTGTATAGGTG
3' ss Score
10.39
5' ss Seq
AGGGTAGTC
5' ss Score
1.16
Exon sequences
Seq C1 exon
TTCTCTTCCTCGGGAAGTAAAGAAGAGACTGCTTTTCAAGCTGTTATTCCTAAACAAATAGAGAGAAAAACCTGTGACCCTAAG
Seq A exon
GTGACATCACCAGAAGAAAACATCTCTACATTGAGCCCTGTTTCTACCTTTTCTTTGAACTCAAGAGATGAAGACTTCATGGTAGAATTCTCTGAGACGTCCCTGAAAGCAAGAACTTTACCTGATGATCTTCATTTTCTCAACTTGGAGG
Seq C2 exon
AACATCTAAATATATTGCTGTTTGGGTTAGCACAAAACCTGCAGAAAGCTCTTTCAAAAGTTGACATATCATTTTATACATCATTGAAGGGAGAGAAACTGAAAAACGCAGAAAATAATGTACCATCCTGCCATCATAGTCAACCTGCAAAACTTGTCATGGTTAAAAAGGAAGGTCCAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658_MULTIEX3-5/8=3-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.397 A=0.147 C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF068397=zf-GRF=PU(44.4=32.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCGGGAAGTAAAGAAGAGACT
R:
AACCATGACAAGTTTTGCAGGT
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development