RnoEX0101912 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231895410-231909154:+
Coord C1 exon
chr2:231895410-231895483
Coord A exon
chr2:231906712-231906832
Coord C2 exon
chr2:231908553-231909154
Length
121 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTTTTCTGGACAGGTG
3' ss Score
11.59
5' ss Seq
CTGGTGACC
5' ss Score
2.02
Exon sequences
Seq C1 exon
CCAGGAGATCACCTGCCACAGTAGTGTCACATGCCCTGCTAGACTGTCCTCACGAGCATCGGGCATCTCAGCAG
Seq A exon
GTGATTTCTCCAGAAAAGATCTCTGCATTCAGCCCTGCACCTACTTTTTCTTTCAACACAAGAAGTGAAGACTCTGAGCTTGAATTCTCTGAAGAGTCTCTGAAAACAAGAACTTTCCCTG
Seq C2 exon
GATTGAAAAACATTGGTTTTCAGGACAATAAGAACTTCCAAAGGTTTCCATTTTTAAGTGGAGCCTCAGTTCCCTTTGTCACTTTGCCACCAGATGATGGACCAGCAGTCTTAGATTCTTGTTCATTTATGATCGATGATGACACACGAGAGCCTTCTGGTTCTTCCAGGTTGAACCTGTGTGAAGAATCAGGTCTTTCATTTGACCTTGGACTTGAGGACCAGGATGGGATTCCACGAGATGTCTTACTGCTTCCTAAGAGTTCTACTCAAAGCAAGTGGCTGAAATATCAAAACCCATCCCACTGCAACTCAGCTGCTCTGAACAGAATTGCCAGTGAAGTGACAGAGGATCTCTCTGCTGAGGCTGTCTCTGGCTTGCATTTTAGCCACACAAGTGAGAGTGAGAGTTCTGTAGACCCTGTGCACTTGCAGATGATAAAAGGCATGCTCTATCAACAGCAGCAGGATTTTACCAGTCAAGATTTGGTTTCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980_MULTIEX3-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.415 C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACGAGCATCGGGCATC
R:
TCCCATCCTGGTCCTCAAGTC
Band lengths:
257-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]