RnoEX0101911 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231895410-231906832:+
Coord C1 exon
chr2:231895410-231895483
Coord A exon
chr2:231899990-231900175
Coord C2 exon
chr2:231906712-231906832
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTTTAACAATTTACCTATAGCCT
3' ss Score
5.63
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CCAGGAGATCACCTGCCACAGTAGTGTCACATGCCCTGCTAGACTGTCCTCACGAGCATCGGGCATCTCAGCAG
Seq A exon
CCTGTTGAGTTTCAAGGACATCAGGTGAAAGGATCTGCTACTAGTGGTGTAATGGTCAGAGGACACAGCTTACAGCTAGGATGCAGTCAGTTTCCAGATAGCATTGAATATGACAGCTTCCTGACCGATCCTTGTGTTTGGACACCAGAGTTGCCTAGCACTTGTGTGCAGTCAGACTTCTTGCAG
Seq C2 exon
GTGATTTCTCCAGAAAAGATCTCTGCATTCAGCCCTGCACCTACTTTTTCTTTCAACACAAGAAGTGAAGACTCTGAGCTTGAATTCTCTGAAGAGTCTCTGAAAACAAGAACTTTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980_MULTIEX3-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.210 C2=0.415
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000014695fB17044
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTGCCACAGTAGTGTCA
R:
AGGGAAAGTTCTTGTTTTCAGAGACT
Band lengths:
186-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]