MmuEX0001497 @ mm9
Exon Skipping
Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127270546-127284487:+
Coord C1 exon
chr3:127270546-127270619
Coord A exon
chr3:127276058-127276243
Coord C2 exon
chr3:127284364-127284487
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTTTAACAATTTGCCTATAGCCT
3' ss Score
5.2
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CCAGGAAATCACCTGCCATAGAAGTTTCGCGTGCTCTGCTAGAGTGTCCTTGTGAGCATCGGGCTTCTCAGCAG
Seq A exon
CCTGTTGAGTTTCAAGGACATCAGGTGAAAGGATCCGCTACTAGTGGTGTAATGGTCAGAGGACACAGCTTACAGCGAGGATGCACTCAGTTTCCAGACAGCATTGACTATGAAAACTTCCTGACTGATACTTGTGTTTGGACACCAGGATTGCCTAGCACTTATGGGCAGACGGACTTCTTGCAG
Seq C2 exon
GTGATTTCTCCAGAACAAAAGATCCCTGCATTGAGCCCTGCACCTACTTTTTCTTTCAACACAAGAAATGAAGACACTGTGCTTGAGCTCTCTGAGGAGTCTCTGAAAACAAGAACTCTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278_MULTIEX1-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.274 C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAATCACCTGCCATAGAAGT
R:
GGGAGAGTTCTTGTTTTCAGAGACT
Band lengths:
194-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: