BtaEX0000980 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPG1]
Coordinates
chr6:14191719-14195526:+
Coord C1 exon
chr6:14191719-14191805
Coord A exon
chr6:14193472-14193657
Coord C2 exon
chr6:14195424-14195526
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTTTTAATAATTCACTGTAGCCT
3' ss Score
6.12
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTCATTCCCTTGGGCACTGAAGAAGAGACTGCTTTTCTAGCTGTTATTCCTAAACAAATGGAGAGAGAAACCTGTAATGACCCCAAG
Seq A exon
CCTGTTGAGTTTCAAGGGCACCAAGTGAAAGGCTCCGCATCTAGCGCTGTGATGGTCAGAGGACACAGCTCACAGGTTGAATGCAGTCAGCTTTCGGATAGCACTGTGTATGGAAGCTGCACGACAAACACTTGTTTTTTGACACCAGAGTTGCCTAGCACTCGTATGCAGATGGGCTTCTTGCAG
Seq C2 exon
TTCCCAAACGAAGAAAACTTTACAAAAGGAGATACTAGCTTTACTATTGAAGACAATTTACAAGTGAGAGCTGAGTTTAATAAGGACTTGACTAAAAATGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026936_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=0.258 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCCTTGGGCACTGAAGA
R:
AGTCAAGTCCTTATTAAACTCAGCT
Band lengths:
178-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development