RnoEX0101913 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231906712-231909154:+
Coord C1 exon
chr2:231906712-231906832
Coord A exon
chr2:231907076-231907205
Coord C2 exon
chr2:231908553-231909154
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTTTCTGTCCTGCAGTGA
3' ss Score
10.41
5' ss Seq
CAGGCCAGT
5' ss Score
1.19
Exon sequences
Seq C1 exon
GTGATTTCTCCAGAAAAGATCTCTGCATTCAGCCCTGCACCTACTTTTTCTTTCAACACAAGAAGTGAAGACTCTGAGCTTGAATTCTCTGAAGAGTCTCTGAAAACAAGAACTTTCCCTG
Seq A exon
TGAAGTGACCCATAGCAGATGTCTCATCAGCGCCACTTGTGACCTCAGCATAGCCTCTTCCTCTCTGCTTTGGGCTGCTGTCAGTGTCAGGACCTCCTCAGTGACTGTTCTCTTCCAGCACTGCGCTCAG
Seq C2 exon
GATTGAAAAACATTGGTTTTCAGGACAATAAGAACTTCCAAAGGTTTCCATTTTTAAGTGGAGCCTCAGTTCCCTTTGTCACTTTGCCACCAGATGATGGACCAGCAGTCTTAGATTCTTGTTCATTTATGATCGATGATGACACACGAGAGCCTTCTGGTTCTTCCAGGTTGAACCTGTGTGAAGAATCAGGTCTTTCATTTGACCTTGGACTTGAGGACCAGGATGGGATTCCACGAGATGTCTTACTGCTTCCTAAGAGTTCTACTCAAAGCAAGTGGCTGAAATATCAAAACCCATCCCACTGCAACTCAGCTGCTCTGAACAGAATTGCCAGTGAAGTGACAGAGGATCTCTCTGCTGAGGCTGTCTCTGGCTTGCATTTTAGCCACACAAGTGAGAGTGAGAGTTCTGTAGACCCTGTGCACTTGCAGATGATAAAAGGCATGCTCTATCAACAGCAGCAGGATTTTACCAGTCAAGATTTGGTTTCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980_MULTIEX3-3/3=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=0.500 C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000014695fB17045
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTCTGCATTCAGCCCTGC
R:
GGCTCTCGTGTGTCATCATCG
Band lengths:
258-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]