HsaEX0011001 @ hg38
Exon Skipping
Gene
ENSG00000138658 | ZGRF1
Description
zinc finger GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr4:112606008-112609429:-
Coord C1 exon
chr4:112609379-112609429
Coord A exon
chr4:112607816-112607937
Coord C2 exon
chr4:112606008-112606091
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCTTTTTTCAGACG
3' ss Score
11.34
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
Exon sequences
Seq C1 exon
ATACTAAAAGAAGATGAAGTTGAACTAAGTGAACCACTTCAGTCTGTGCAG
Seq A exon
ACGGGTTCTTACTCTGTCACCCAGACTAGAGTGCAGTGGCACAGTCACAGCTCACTGCAGCCTTGACCTCCAGTGCTCAAGCCATCCTCCTGCTTCAGCCTCCAAAGTAGCTGGGACCACAG
Seq C2 exon
TTCTCTTCCTCGGGAAGTAAAGAAGAGACTGCTTTTCAAGCTGTTATTCCTAAACAAATAGAGAGAAAAACCTGTGACCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658_MULTIEX3-2/8=1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=0.333 C2=0.397
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGAAGTTGAACTAAGTGAACCA
R:
AGGGTCACAGGTTTTTCTCTCT
Band lengths:
122-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development