HsaEX0011001 @ hg19
Exon Skipping
Gene
ENSG00000138658 | C4orf21
Description
chromosome 4 open reading frame 21 [Source:HGNC Symbol;Acc:25654]
Coordinates
chr4:113527164-113530585:-
Coord C1 exon
chr4:113530535-113530585
Coord A exon
chr4:113528972-113529093
Coord C2 exon
chr4:113527164-113527247
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCTTTTTTCAGACG
3' ss Score
11.34
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
Exon sequences
Seq C1 exon
ATACTAAAAGAAGATGAAGTTGAACTAAGTGAACCACTTCAGTCTGTGCAG
Seq A exon
ACGGGTTCTTACTCTGTCACCCAGACTAGAGTGCAGTGGCACAGTCACAGCTCACTGCAGCCTTGACCTCCAGTGCTCAAGCCATCCTCCTGCTTCAGCCTCCAAAGTAGCTGGGACCACAG
Seq C2 exon
TTCTCTTCCTCGGGAAGTAAAGAAGAGACTGCTTTTCAAGCTGTTATTCCTAAACAAATAGAGAGAAAAACCTGTGACCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658_MULTIEX2-8/13=7-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.790 A=0.333 C2=0.399
Domain overlap (PFAM):
C1:
NO
A:
PF139001=GVQW=WD(100=72.7)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGAAGTTGAACTAAGTGAACCA
R:
AGGGTCACAGGTTTTTCTCTCT
Band lengths:
122-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)