BtaEX6031071 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002199 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr6:68013802-68035690:-
Coord C1 exon
chr6:68035577-68035690
Coord A exon
chr6:68015028-68015135
Coord C2 exon
chr6:68013802-68013912
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTTCTTTTTTTCAGATT
3' ss Score
12.98
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CGCTCTGCAGAGGGGGCGAGAGCTTTCTGTGCACCAGTGGCATCTGCGTCCCCAGGAAACTGCAGTGTAACGGCTACAACGACTGTGATGACTGGAGTGACGAGGCTCATTGCA
Seq A exon
ATTGCAGCGAGAATCTGTTTCACTGTCACACAGGCAAGTGCCTTAATTATAGCCTGGTGTGTGATGGATATGATGACTGTGGAGATCTGAGTGATGAACAAAACTGTG
Seq C2 exon
ATTGCAACCCCATAGAGGAACATCGCTGTGGAGACGGGCGTTGCATTGCCATTGAATGGGTGTGTGATGGGGACCACGACTGCGTGGATAAATCCGATGAAGTCAATTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002199-'5-7,'5-5,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAGGGGGCGAGAG
R:
AGCAATTGACTTCATCGGATTTATCC
Band lengths:
221-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]