MmuEX6018020 @ mm9
Exon Skipping
Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72749613-72763450:-
Coord C1 exon
chr5:72763337-72763450
Coord A exon
chr5:72751890-72751997
Coord C2 exon
chr5:72749613-72749723
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTTGTTTTTCAGACT
3' ss Score
10.98
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CACTCTGTGGAGGGGGCGAGAGCTTCCTGTGTACCAGCGGGCTCTGCGTCCCCAAGAAGCTGCAGTGTAACGGCTATAATGACTGTGATGACTGGAGCGACGAGGCGCATTGCA
Seq A exon
ACTGCAGCAAGGATCTGTTTCACTGTGGCACAGGCAAGTGCCTCCATTACAGCCTCTTGTGTGATGGGTACGATGACTGTGGGGACCTGAGTGACGAGCAAAACTGTG
Seq C2 exon
ATTGTAATCTCACAAAAGAGCATCGCTGTGGAGATGGGCGCTGCATTGCGGCTGAGTGGGTGTGCGATGGGGACCATGACTGTGTGGACAAGTCTGATGAGGTCAACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGAGGGGGCGAGAG
R:
GCAGTTGACCTCATCAGACTTGT
Band lengths:
220-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: