BtaEX6031523 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N633]
Coordinates
chr6:85646134-85646828:-
Coord C1 exon
chr6:85646678-85646828
Coord A exon
chr6:85646573-85646666
Coord C2 exon
chr6:85646134-85646183
Length
94 bp
Sequences
Splice sites
3' ss Seq
GCTGAAGAAGTCTCTTTTACCAT
3' ss Score
-12.19
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GAAAAATCATTCAGAAGATTGGACGGTTGACTTTGGAACTATAGTAAATAAACCGTATATGACACGGAAAGTTCAAAACATTATCATTCATGAAAATTTTAGTGGCCCTGGGATTCATGATGATATTGCTGTTGTACAGCTCGCTGAAGAA
Seq A exon
CATGTTCGTAAGATTTGTCTTCCTGAAGCCAAAATGAAACTCTCAGCAAATGACAGTGTTGTAGTTACAGGATGGGGAACACTTTATATGAATG
Seq C2 exon
GTCTTCTTCCAGTGATACTTCAGCAGGCCTTTTTGAAGATTATTGATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038520-'21-22,'21-21,22-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.9=100)
A:
PF0008921=Trypsin=FE(14.2=100)
C2:
PF0008921=Trypsin=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAGATTGGACGGTTGACT
R:
GGCCTGCTGAAGTATCACTGG
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]