MmuEX6018447 @ mm10
Exon Skipping
Gene
ENSMUSG00000061184 | Tmprss11c
Description
transmembrane protease, serine 11c [Source:MGI Symbol;Acc:MGI:3521861]
Coordinates
chr5:86235432-86239498:-
Coord C1 exon
chr5:86239327-86239498
Coord A exon
chr5:86237621-86237880
Coord C2 exon
chr5:86235432-86235574
Length
260 bp
Sequences
Splice sites
3' ss Seq
AATAAATCTATTTCCTTTAGGGC
3' ss Score
8.18
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTTGTGGACGACGCACAATTATTCATAGAGGTCACAAAGTAGCAGGAGGCCAGGATGCTGAGGAAGGAGAATGGCCCTGGCAAGCCAGCCTTCAACAGAACAGTGTCCACCGATGTGGAGCTACTCTGATCAGTAACTACTGGCTTATCACTGCTGCTCACTGTTTCATACG
Seq A exon
GGCTGCAAACCCCAAAGACTGGAAAGTTAGCTTTGGGTTTCTTCTAAGTAAACCACAAGCACCACGAGCTGTCAAGAATATTATAATCCACGAGAACTACAGTTACCCTGCACATGATAATGACATAGCTGTTGTGCGTCTGTCTTCGCCAGTATTGTATGAAAGCAACATCCGAAGGGCTTGTCTACCAGAAGCTACTCAGAAGTTCCCACCCAACTCAGATGTAGTGGTCACTGGGTGGGGAACGTTAAAATCGGATG
Seq C2 exon
GAGACAGTCCTAATATTCTCCAGAAAGGAAAAGTGAAGATTATAGACAATAAGACCTGTAATAGTGGAAAGGCATATGGTGGCATGATCACACCTGGAATGATGTGTGCTGGGTTCCTGAAGGGACGTGTTGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061184-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=75.9)
A:
PF0008921=Trypsin=FE(38.5=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTGGACGACGCACAATTA
R:
CTTCAGGAACCCAGCACACAT
Band lengths:
294-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types