GgaEX7003885 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr4:51073651-51076359:-
Coord C1 exon
chr4:51075476-51076359
Coord A exon
chr4:51074538-51074797
Coord C2 exon
chr4:51073651-51073793
Length
260 bp
Sequences
Splice sites
3' ss Seq
AGCACTCTTACCTTTTTCAGAAT
3' ss Score
8.09
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TTGTATGGTGAAGGGTTTTGATTCTTGATTTGGGCTGTTGATGAACCTCAGCCTGAATTGTTGACCATCATGGTTTACCATGATAGTCAGTTGTTCATTCAGTCTTCTAACAGAATGGGTTGTGCATGAGGATCTCTGTTTTGGGGACTGGTGGAAGGTATGTTTTCATATTGATGATATACTGTTGGAGAACCTAGTGGTGTGTGATTTTTTACATCTATTTTCCACAGTACCTACAGCCATTGGCAGGCATGTTTACTAAACAGAAGAGTAACTAATACATATTTTTTTTCCTTTTTGACAGTCTGCGGGTTACGGCAGAATAGATCAGTCAAATCAATAGCAAAAGCAACATCCTTGAGAATAGTTGGAGGATTGTCTTCTGCAGAGACTGGGGATTGGCCATGGCAAGCTAGTTTGCAGTACAATAACGTCCATCGCTGTGGTGCAACGCTCATCAGCAATACATGGCTTGTATCTGCCGCTCACTGCTTCAGAGA
Seq A exon
AATGAGTCACCCTCACAAGTGGACTGCTACTTTTGGAGCTCTTTTGAAGCCACCAACTTTGAAACGATCAGTCAAGACCATTATTATTCACGAAATGTACCGCTACCCAGAACACGATTATGACATTGCACTTGTGAAGCTCTCTAAACAAGTTGAGTTTACAAGTAACATACACCGCGTTTGTCTGCCTGAGCCATCTCAGACTTTTCCATATAATATTTATGCTGTCATCACAGGCTGGGGAGCGCTTACCAATGATG
Seq C2 exon
GTCCGACTCCTAATGCTCTTCAGGAAGCAACAGTGAAACTTATCGACTCAGACACTTGCAACAGAAAAGAAGTGTATGATGGGGACATAACACCTAGGATGTTGTGTGCTGGGTACTTGGAAGGAGGAGTAGATGCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026134-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
NA
A:
PF0008921=Trypsin=PU(46.6=95.4)
C2:
PF0008921=Trypsin=FE(26.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGGTTACGGCAGAATAGA
R:
CCCAGCACACAACATCCTAGG
Band lengths:
307-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]