MmuEX6018461 @ mm9
Exon Skipping
Gene
ENSMUSG00000072845 | Tmprss11a
Description
transmembrane protease, serine 11a [Source:MGI Symbol;Acc:MGI:2684853]
Coordinates
chr5:86843502-86851690:-
Coord C1 exon
chr5:86851519-86851690
Coord A exon
chr5:86849027-86849286
Coord C2 exon
chr5:86843502-86843644
Length
260 bp
Sequences
Splice sites
3' ss Seq
ATGCTACTAATCTTTCCTAGCAA
3' ss Score
4.73
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
ATTGTGGCAAGCGAGCTATCCCATTAATTGCCAACAGAATAGTGTCTGGAAACCCTGCAGCTAAGGGTGCCTGGCCGTGGCAAGTTTCCCTTCAGCGAAGCAACATCCATCAGTGTGGGGGCACGTTGATTGGTAACATGTGGGTCGTCACTGCAGCACACTGTTTTAGAAC
Seq A exon
CAATTCAAACCCTCGCCAATGGACTCTTAGTTTTGGAACAACAATAAATCCTCCCTTAATGAAAAGAGACGTCAGAAGAATTATTATGCATGAAAGGTATCGTCCCCCAGCAAGAGACCATGACATTGCTCTAGTGCAGTTTTCTCCCAGAGTCACCTTTTCGGATGAAGTGCGCCGAATTTGTTTGCCAGAACCCTCTGCATCTTTCCCACCAAATTCAACTGTCTACATCACAGGATTCGGAGCACTTTACTATGGCG
Seq C2 exon
GGGAATCCCAAAATGAGCTCCGTGAAGCCAGAGTACAAATCATAAGCAATGACATCTGCAAGAAGCGACACGTGTATGGCAATGAAATAAAACGTGGGATGTTCTGTGCTGGATTTCTGGAAGGAAATTACGATGCCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072845-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=75.9)
A:
PF0008921=Trypsin=FE(38.5=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGGCAAGCGAGCTATCC
R:
TCCTTCCAGAAATCCAGCACA
Band lengths:
297-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: