MmuEX6018461 @ mm10
Exon Skipping
Gene
ENSMUSG00000072845 | Tmprss11a
Description
transmembrane protease, serine 11a [Source:MGI Symbol;Acc:MGI:2684853]
Coordinates
chr5:86414477-86422665:-
Coord C1 exon
chr5:86422494-86422665
Coord A exon
chr5:86420002-86420261
Coord C2 exon
chr5:86414477-86414619
Length
260 bp
Sequences
Splice sites
3' ss Seq
ATGCTACTAATCTTTCCTAGCAA
3' ss Score
4.73
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
ATTGTGGCAAGCGAGCTATCCCATTAATTGCCAACAGAATAGTGTCTGGAAACCCTGCAGCTAAGGGTGCCTGGCCGTGGCAAGTTTCCCTTCAGCGAAGCAACATCCATCAGTGTGGGGGCACGTTGATTGGTAACATGTGGGTCGTCACTGCAGCACACTGTTTTAGAAC
Seq A exon
CAATTCAAACCCTCGCCAATGGACTCTTAGTTTTGGAACAACAATAAATCCTCCCTTAATGAAAAGAGACGTCAGAAGAATTATTATGCATGAAAGGTATCGTCCCCCAGCAAGAGACCATGACATTGCTCTAGTGCAGTTTTCTCCCAGAGTCACCTTTTCGGATGAAGTGCGCCGAATTTGTTTGCCAGAACCCTCTGCATCTTTCCCACCAAATTCAACTGTCTACATCACAGGATTCGGAGCACTTTACTATGGCG
Seq C2 exon
GGGAATCCCAAAATGAGCTCCGTGAAGCCAGAGTACAAATCATAAGCAATGACATCTGCAAGAAGCGACACGTGTATGGCAATGAAATAAAACGTGGGATGTTCTGTGCTGGATTTCTGGAAGGAAATTACGATGCCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072845-'7-9,'7-6,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=75.9)
A:
PF0008921=Trypsin=FE(38.5=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGGCAAGCGAGCTATCC
R:
TCCTTCCAGAAATCCAGCACA
Band lengths:
297-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types