BtaEX6031503 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020298 | TMPRSS11A
Description
transmembrane protease, serine 11A [Source:HGNC Symbol;Acc:HGNC:27954]
Coordinates
chr6:85339539-85356890:-
Coord C1 exon
chr6:85356719-85356890
Coord A exon
chr6:85344137-85344396
Coord C2 exon
chr6:85339539-85339681
Length
260 bp
Sequences
Splice sites
3' ss Seq
TACTATCTAAACTTTTCCAGTAA
3' ss Score
5.17
5' ss Seq
GTGGTGGGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
GTTGTGGTAAACGAGTTGTTCCATTAGTAAGCAACAGAATAATGTCCGGAGAGATCGCGGGCAAGGCTGCCTGGCCTTGGCAAGCTTCTCTTCAGCATAATAAAATACATCAGTGTGGGGCCACCTTGATTAGTAATACTTGGCTTGTTACTGCAGCGCACTGCTTTAAGAA
Seq A exon
TAAAGAAAACCCACATCAGTGGACTGTTAGCTTTGGAACAAAAATCAACCCTCCATTAATGAAAAGAAACATCAAAAGAATTATCGTCCATGAGAGGTACAGCTCCCCAGCAAGAGAGTACGACATTGCTGTTGTGCAGTTCTCTCCCAGAGTCTCCTTTACTGATGACATCCGTCGAATTTGTTTGCCAGAAGCCTCTGCGTCCTTCCAACCAAATTCAACTGTCTATATCACAGGATTTGGAGCACTTTTTTATGGTG
Seq C2 exon
GGGAATCCCAAAATGATCTTCGAGAAGCCAGACTGAAAATCATAAGTGATGATGTGTGCAAGCAGCCACATGTGTATGGCAGTGATATAAAATTTGGAATGATGTGTGCTGGATATCTGGAAGGAATATATGATGCCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020298-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=75.9)
A:
PF0008921=Trypsin=FE(38.5=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTAAACGAGTTGTTCCA
R:
TCCTTCCAGATATCCAGCACACA
Band lengths:
295-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]