HsaEX6084593 @ hg19
Exon Skipping
Gene
ENSG00000187054 | TMPRSS11A
Description
transmembrane protease, serine 11A [Source:HGNC Symbol;Acc:27954]
Coordinates
chr4:68780306-68788644:-
Coord C1 exon
chr4:68788473-68788644
Coord A exon
chr4:68784691-68784950
Coord C2 exon
chr4:68780306-68780448
Length
260 bp
Sequences
Splice sites
3' ss Seq
TAATTTCTAACCTTTTCCAGGTA
3' ss Score
8.9
5' ss Seq
GTGGTGGGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
GTTGTGGTAAACGAGTTGTTCCATTAAACGTCAACAGAATAGCATCTGGAGTCATTGCACCCAAGGCGGCCTGGCCTTGGCAAGCTTCCCTTCAGTATGATAACATCCATCAGTGTGGGGCCACCTTGATTAGTAACACATGGCTTGTCACTGCAGCACACTGCTTCCAGAA
Seq A exon
GTATAAAAATCCACATCAATGGACTGTTAGTTTTGGAACAAAAATCAACCCTCCCTTAATGAAAAGAAATGTCAGAAGATTTATTATCCATGAGAAGTACCGCTCTGCAGCAAGAGAGTACGACATTGCTGTTGTGCAGGTCTCTTCCAGAGTCACCTTTTCGGATGACATACGCCAGATTTGTTTGCCAGAAGCCTCTGCATCCTTCCAACCAAATTTGACTGTCCACATCACAGGATTTGGAGCACTTTACTATGGTG
Seq C2 exon
GGGAATCCCAAAATGATCTCCGAGAAGCCAGAGTGAAAATCATAAGTGATGATGTCTGCAAGCAACCACAGGTGTATGGCAATGATATAAAACCTGGAATGTTCTGTGCCGGATATATGGAAGGAATTTATGATGCCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187054-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=75.9)
A:
PF0008921=Trypsin=FE(38.5=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTAAACGAGTTGTTCCA
R:
TCCTTCCATATATCCGGCACAGA
Band lengths:
295-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)