RnoEX6042001 @ rn6
Exon Skipping
Gene
ENSRNOG00000046764 | Tmprss11a
Description
transmembrane serine protease 11A [Source:RGD Symbol;Acc:1596322]
Coordinates
chr14:23273790-23281198:+
Coord C1 exon
chr14:23273790-23273961
Coord A exon
chr14:23275988-23276247
Coord C2 exon
chr14:23281056-23281198
Length
260 bp
Sequences
Splice sites
3' ss Seq
ATGCTGCTACTCTTTTCTAGCAA
3' ss Score
7.25
5' ss Seq
GTGGTGGGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
ATTGCGGCAAGCGAGCCATCCCATTAATTGCCAACAGAATAGTGTCTGGAAACCCTGCAGCCAAGGGTGCCTGGCCTTGGCAAGTTTCCCTTCAACGCAACAACATCCACCAGTGTGGGGGCACACTGATTGGTAACATGTGGGTCGTCACTGCAGCGCACTGCTTTAGAAC
Seq A exon
CAATGCAAACCCTCGCCAATGGACTCTTAGCTTTGGAACAACAATAAATCCTCCCTTAATGAAAAGAGAAGTCAGAAGAATTATTATGCATGAGAAGTATCGCCCTCCAGCCAGAGACCACGACATCGCTCTTGTGCAGTTTTCTCCCAGAGTCACCTTTTCAGATGAAGTACGCCGAATTTGTTTGCCAGAACCCTCTGCCTCGTTCCCACCAAATTCAACTGTCTACATCACAGGATTCGGAGCACTTTACTATGGTG
Seq C2 exon
GGGAGTCCCAAAATGAGCTCCGTGAAGCCAGAGTACAAATCATAAGCAACGACGTGTGCAAGCAGCGACATGTGTACGGCAATGAAATAAAACGCGGGATGTTCTGTGCTGGATTTCTGGAAGGAATTTACGATGCCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046764-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=75.9)
A:
PF0008921=Trypsin=FE(38.5=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGCCATCCCATTAATTGC
R:
CCTGCAGGCATCGTAAATTCCT
Band lengths:
305-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]