DreEX6084752 @ danRer10
Exon Skipping
Gene
ENSDARG00000044655 | st14b
Description
suppression of tumorigenicity 14 (colon carcinoma) b [Source:ZFIN;Acc:ZDB-GENE-061103-613]
Coordinates
chr21:25239516-25243469:-
Coord C1 exon
chr21:25243286-25243469
Coord A exon
chr21:25242937-25243208
Coord C2 exon
chr21:25239516-25239652
Length
272 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTTTTTTGCTAGATA
3' ss Score
8.92
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
AATGTGGGAAGAAGCCTCACAAGTCCAGTCGTATTGTCGGTGGAAAAGACTCAGATGAGGGAGAATGGCCCTGGCAGGTCAGCCTCCACATGAAGACGCAAGGTCATGTGTGTGGTGCGTCTGTTATCAGTAACAGCTGGCTGGTCACTGCTGCTCACTGCGTGCAAGATAATGATCAATTCAG
Seq A exon
ATATTCACAGGCTGACCAGTGGGAGGTCTATCTAGGCCTACACAACCAGGGCGAGACTAGTAAATCTACACAAAGAAGTGTGTTGCGCATCATTCCTCACCCTCAGTATGATCACTCGAGCTACGACAATGACATCGCTCTAATGGAGCTGGACAGTCCTGTGACTCTGAATCAGAACATCTGGCCCATCTGCTTACCTGATCCCACACATTACTTCCCAGCCGGAAAATCTGTATGGATCACTGGCTGGGGCAAGTTAAGAGAGGGAAGCG
Seq C2 exon
ATGCAGTGCCGTCAGTGTTGCAGAAGGCTGAGGTGCGCATTATTAACAGCACTGTGTGCAGCAAGCTGATGGATGATGGGATTACTCCTCACATGATCTGTGCAGGTGTATTGAGCGGAGGTGTTGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044655-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.4=80.6)
A:
PF0008921=Trypsin=FE(38.9=100)
C2:
PF0008921=Trypsin=FE(19.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCTCACAAGTCCAGTCG
R:
ACACCTCCGCTCAATACACCT
Band lengths:
298-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]