RnoEX0086373 @ rn6
Exon Skipping
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32241032-32243484:-
Coord C1 exon
chr8:32243298-32243484
Coord A exon
chr8:32241499-32241773
Coord C2 exon
chr8:32241032-32241168
Length
275 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTATGCCGTCCCAGGTA
3' ss Score
7.99
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ACTGTGGGCTGCGATCCTTTACCAAACAGGCTCGAGTGGTTGGTGGCACGAATGCGGACGAGGGCGAGTGGCCCTGGCAGGTGAGCCTCCACGCTCTGGGCCAGGGCCACTTGTGTGGGGCCTCGCTCATCTCTCCTGACTGGCTGGTCTCTGCAGCTCATTGCTTTCAGGATGAGACAATTTTCAA
Seq A exon
GTACTCAGACCACACCATGTGGACAGCCTTCCTCGGTCTGCTGGACCAGAGCAAGCGCAGTGCCTCTGGGGTACAGGAGCACAAGCTCAAACGTATCATCACTCACCCTTCCTTTAATGACTTTACCTTCGACTATGACATTGCCTTGCTGGAGCTGGAGAAGCCGGCAGAGTACAGCACTGTCGTGCGCCCCATCTGCCTGCCTGATAATACCCATGTCTTTCCTGCCGGCAAAGCCATCTGGGTCACAGGCTGGGGCCACACGAAAGAAGGAG
Seq C2 exon
GAACTGGAGCACTGATCCTGCAGAAGGGAGAGATCCGGGTCATCAACCAGACCACCTGTGAGGAACTCTTGCCGCAGCAGATCACCCCACGAATGATGTGTGTGGGTTTCCTCAGTGGGGGTGTGGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903-'23-17,'23-16,24-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.3=79.4)
A:
PF0008921=Trypsin=FE(39.1=100)
C2:
PF0008921=Trypsin=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGCGATCCTTTACCAAA
R:
CCACTGAGGAAACCCACACAC
Band lengths:
300-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]