GgaEX6025509 @ galGal3
Exon Skipping
Gene
ENSGALG00000001331 | F1NLW7_CHICK
Description
NA
Coordinates
chr24:1606883-1608109:+
Coord C1 exon
chr24:1606883-1607069
Coord A exon
chr24:1607466-1607740
Coord C2 exon
chr24:1607973-1608109
Length
275 bp
Sequences
Splice sites
3' ss Seq
GTACTCTGTGACTCCTGCAGCTA
3' ss Score
8.01
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
ACTGTGGGACCCGCTCCTACATTAAGAAATCACGGATCGTCGGTGGGCAGAACTCAGATGTGGGAGAGTGGCCGTGGCAGGTCAGCCTCCATGCCAAGAGCCAGGGCCACGTCTGTGGAGCTTCACTCATCTCAGAGACCTGGCTGGTGTCAGCAGCACATTGCTTCCTGGAGCTGCAAGGCATCCG
Seq A exon
CTACTCAGACGCCAGCCTGTGGACAGCCTACCTGGGCCTGACCAACCAAAGCAAACGCAACGATGCCAACGTGCAAATGAAGCAAATCAAGCGCATCATCTCCCACCGTTCCTTCAATGACTACACCTACGACTATGATATTGCTGTGATAGAGCTGCAGAGCCCCGTCACCTTCTCCGCTGTCGTCCAGCCCATCTGCCTGCCCGATTCTACGCACAACTTCCCCGTGGGCAAAGACCTGTGGGTGACCGGATGGGGAGCGACCGTGGAAGGAG
Seq C2 exon
GCAGCGGATCCACCATCTTGCAGAAAGCAGAAATCCGGGTGATCAACCAAACCGTCTGCAACCGGCTGCTGACCGACCAGCTGACAGAGCGCATGATGTGCGTGGGGGTCCTGACGGGCGGCGTGGATGCGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001331-'19-27,'19-26,20-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.3=79.4)
A:
PF0008921=Trypsin=FE(39.1=100)
C2:
PF0008921=Trypsin=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACCCGCTCCTACATTAA
R:
GACCCCCACGCACATCATG
Band lengths:
293-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]