BtaEX6102448 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019712 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr29:36965309-36970623:+
Coord C1 exon
chr29:36965309-36965495
Coord A exon
chr29:36969948-36970222
Coord C2 exon
chr29:36970487-36970623
Length
275 bp
Sequences
Splice sites
3' ss Seq
GCCCTCGCTGCCACCTGCAGGTA
3' ss Score
9.43
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
ACTGTGGGCGGCGGTCGTTCACCAGGCAGTCCCGGGTCGTCGGAGGTGAGAATTCAGACCAAGGCGAGTGGCCCTGGCAGGTGAGCCTCCATGCCCAGGGCCACGGCCACTTGTGCGGGGCCTCTCTCATCTCCCCCAGCTGGATGATATCTGCCGCACATTGCTTCGTCGATGACAGAGGATTCAG
Seq A exon
GTACTCGGAACACAGTGTGTGGACAGCCTTCCTGGGCCTGCATGACCAGAGCAAGCGCAACGCCCCGGGGGTTCAGGAGCGCGGGCTGCAGCGCATCATCAAGCACCCGTTCTTCAACGACTTCACCTTCGACTACGACATCGCGCTGCTGCAGCTGGACCGGCCGGTGGAGTACAGCGCCACCATCCGGCCCATCTGCCTGCCCGCGGCCGACTACACCTTCCCCACCGGCAAGGCCATCTGGGTCACCGGCTGGGGCCACACGCAGGAGGCAG
Seq C2 exon
GCCAGGGGGCTATGATCCTGCAGAAGGGCGAGATCCGGGTCATCAACCAGACGACTTGCGAGCACCTGCTGCCGCAGCAGATAACCCCACGCATGATTTGCGTGGGCTACCTCAGCGGTGGCGTGGACGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019712-'27-27,'27-25,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.3=79.4)
A:
PF0008921=Trypsin=FE(39.1=100)
C2:
PF0008921=Trypsin=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTTCACCAGGCAGTCC
R:
AGGTAGCCCACGCAAATCATG
Band lengths:
286-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]