BtaEX6031490 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr6:85187710-85190800:-
Coord C1 exon
chr6:85190629-85190800
Coord A exon
chr6:85189178-85189437
Coord C2 exon
chr6:85187710-85187852
Length
260 bp
Sequences
Splice sites
3' ss Seq
AATAAATCTATTTTCTTTAGGGC
3' ss Score
7.77
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTTGTGGACATCGCAAAATTACTCGCTCTGGCAACAAGATAGCCGGGGGCATGGATGCTGAGGAAGGAGAATGGCCCTGGCAAGCTAGTCTTCAACAGAAAAATGTCCACCGATGTGGAGCCACTCTGATTAGTAACAGCTGGCTTGTCACTGCTGCTCACTGTTTCCTAAA
Seq A exon
GGCCAGGGATCCCAAACAATGGAATGTTAGTTTCGGGCTCCTTTTAAGTGATCCACAAATACAGCGAAGTGTCAAGGATATTATAATTCATGAAAACTACCACTACCCCTCACACAAGAATGACATCGCTGTAGTGCGTCTGTCCTCACCAGTACTGTATACAAGCAATATCCGAAGAGCATGTCTTCCAGAAACTTCTTATGCATTCCCATCCAATTCTGATGTGGTGGTCACTGGATGGGGAACATTAAAGACTGATG
Seq C2 exon
GAACAAGTCCTAATATACTCCAAAAGGGATTAGTGAAGATTATAGATAGCAAGATCTGCAACAGGAAAGTGGTATATGACGGTGCAATCACACCCGGGATGTTGTGTGCTGGGTTTCTGGAAGGAAGTGTCGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038648-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=75.9)
A:
PF0008921=Trypsin=FE(38.5=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAAATTACTCGCTCTGGC
R:
GGCATCGACACTTCCTTCCAG
Band lengths:
298-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]