BtaEX6031528 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N633]
Coordinates
chr6:85615060-85617345:-
Coord C1 exon
chr6:85617171-85617345
Coord A exon
chr6:85615946-85616205
Coord C2 exon
chr6:85615060-85615202
Length
260 bp
Sequences
Splice sites
3' ss Seq
ATGATTTTTATTTCTTTCAGTTC
3' ss Score
9.25
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GCTGTGGGAGACGACCAAGGATGTCAGCTACATATGATAGAATCAGGGGTGGATCCACTGCTCAGGAAGGAGAGTGGCCCTGGCAAGCAAGTCTCAAAAAGAATGGCCAGCACTACTGTGGAGCATCTTTGATCAGTGACAGATACCTGTTGACTGCAGCTCACTGCTTTAAAAA
Seq A exon
TTCACAAGATCCAAGGAACTATACTGTCACCTTTGGTACCAGAGTAAATCTCCCCTATATGCAACACTATGTTCAGCAAATTTTTATTCATGAAAACTACATCAGGGGTGAACTTCATGATGACATTGCAGTTATATTGCTTACTGAAAAAGTTTTATTTAAGAACGATGTCCATTCAGTTTGTCTTCCTGAAGCCACACAGATTTTTCCACCAGGTGAAGGAGTTGTTGTCACAGGATGGGGAGCACTTTCATATGATG
Seq C2 exon
GTGAATATCCAGTATTACTTCAGAAAGCACCTGTGAAGATTATTGATACAAACACTTGTAATGCTTGGGAAGCATATAATGGGATGATACAAGACACAATGCTATGTGCTGGCTACTTAGAAGGAAATATTGATGCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038520-'34-34,'34-33,35-34=AN
Average complexity
A_S
Mappability confidence:
83%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=74.6)
A:
PF0008921=Trypsin=FE(38.5=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGACCAAGGATGTCAGCT
R:
TCCTTCTAAGTAGCCAGCACA
Band lengths:
292-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]