MmuEX6018485 @ mm10
Exon Skipping
Gene
ENSMUSG00000035861 | Tmprss11b
Description
transmembrane protease, serine 11B [Source:MGI Symbol;Acc:MGI:2442893]
Coordinates
chr5:86661543-86663562:-
Coord C1 exon
chr5:86663388-86663562
Coord A exon
chr5:86662174-86662433
Coord C2 exon
chr5:86661543-86661685
Length
260 bp
Sequences
Splice sites
3' ss Seq
TGGGTTTTTTGTTCCCTCAGGAC
3' ss Score
10.14
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GCTGTGGGAGAAGACCAAGAATGTCTGCAACCTACGACAGAATCACGGGAGGTTCCACTGCTCACAAAGGAGAGTGGCCATGGCAAGCGAGTCTCAGAGTGAATGGTAAACACTACTGTGGGGCATCTCTGATTGGCGAAAGATTTCTGCTCACAGCAGCTCATTGCTTTCAAGG
Seq A exon
GACAAATAATCCAAAAAACTTAACTGTCAGCTTTGGCACTAGAGTAACTCCAGCCTACATGCAGCATTCTGTTCAAGAGATTATTATTCATGAAGATTATGTGAAGGGGGAACATCATGATGACGTTGCAGTTATAAAGCTCACTGAAAAAGTTTCATTCAATAATGATGTGCATCGGGTTTGTCTTCCGGAATCCACCCAGATTTTTCCACCAGGTGAAGGAGTCGTTGTTACAGGATGGGGATCATTTTCTTACAATG
Seq C2 exon
GTAAATCCCCACTGTTACTTCAGAAAGCATCCATTAAAATCATTGACACAAATACTTGCAATTCAGAAGAAGCTTATGGAGGCAGGATAGTGGACACAATGCTCTGTGCTGGCTACTTGGAAGGCAGTATCGATGCTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035861-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=74.6)
A:
PF0008921=Trypsin=FE(38.5=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGGAGAAGACCAAGAA
R:
CCTTCCAAGTAGCCAGCACAG
Band lengths:
299-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types