BtaEX6031657 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002348 | SLC4A4
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 4 (SLC4A4), mRNA. [Source:RefSeq mRNA;Acc:NM_174605]
Coordinates
chr6:88517152-88528199:+
Coord C1 exon
chr6:88517152-88517330
Coord A exon
chr6:88518483-88518555
Coord C2 exon
chr6:88528131-88528199
Length
73 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTGATTTGGTTTCAGGGA
3' ss Score
8.33
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAAGGAGCTGGATATCACCTGGATCTCTTTTGGGTGGCCATCCTCATGGTGGTGTGCTCCTTCATGGCCCTTCCATGGTATGTGGCTGCTACTGTCATCTCCATCGCTCACATCGACAGTTTGAAGATGGAGACAGAGACTTCTGCACCTGGAGAACAGCCCAAGTTCCTAGGAGTGAG
Seq A exon
GGAACAAAGAGTCACTGGAACCCTTGTGTTTATTCTGACTGGTCTGTCAGTCTTTATGGCTCCCATCTTGAAG
Seq C2 exon
TTTATTCCCATGCCTGTACTCTATGGTGTGTTCCTGTATATGGGGGTAGCATCTCTTAATGGTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002348-'41-27,'41-25,42-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=FE(4.6=100)
C2:
PF0095516=HCO3_cotransp=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTCATGGTGGTGTGCTC
R:
ACCATAGAGTACAGGCATGGGA
Band lengths:
168-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]