DreEX6012912 @ danRer10
Exon Skipping
Gene
ENSDARG00000013730 | slc4a4a
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]
Coordinates
chr5:45162544-45166986:-
Coord C1 exon
chr5:45166808-45166986
Coord A exon
chr5:45162703-45162775
Coord C2 exon
chr5:45162544-45162612
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTTTATCATTTCCTCTTTAGGGA
3' ss Score
10.76
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAAGGTGCAGGCTATCATCTGGACCTTTTCTGGGTGGCTGTTCTGTTAGCGGTGTGCTCTTTCATGGGTCTGCCATGGTATGTGGCTGCAACAGTTATTTCCATCGCCCACATTGACAGCTTGAAGATGGAGACAGAGACCTCTGCCCCAGGAGAACAGCCCAAATTCTTAGGTGTCAG
Seq A exon
GGAACAAAGAGTCACTGGTGTCATGGTCTTCATTCTTACTGGCATTTCTGTCTTCATGTCTCCAGTTCTCAAG
Seq C2 exon
TTCATACCCATGCCAGTGCTGTACGGAGTCTTCCTTTACATGGGTGTTGCATCACTTAATGGCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013730-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=FE(4.6=100)
C2:
PF0095516=HCO3_cotransp=FE(4.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGTATGTGGCTGCAACA
R:
TGCACGCCATTAAGTGATGCA
Band lengths:
175-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]