BtaEX6031658 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002348 | SLC4A4
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 4 (SLC4A4), mRNA. [Source:RefSeq mRNA;Acc:NM_174605]
Coordinates
chr6:88507845-88518555:+
Coord C1 exon
chr6:88507845-88508006
Coord A exon
chr6:88517152-88517330
Coord C2 exon
chr6:88518483-88518555
Length
179 bp
Sequences
Splice sites
3' ss Seq
ATTGTTACCTCTTGCTGCAGAAA
3' ss Score
7.35
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CCAACGAGTCCAAACCGAGGTTGGTTTGTTGCACCGTTCGGTGGAAACCCCTGGTGGGTGTACCTTGCAGCTGCCATACCTGCTTTGTTGGTCACCATCCTGATCTTCATGGACCAGCAAATCACAGCTGTGATTGTAAACAGGAAGGAACACAAACTCAAG
Seq A exon
AAAGGAGCTGGATATCACCTGGATCTCTTTTGGGTGGCCATCCTCATGGTGGTGTGCTCCTTCATGGCCCTTCCATGGTATGTGGCTGCTACTGTCATCTCCATCGCTCACATCGACAGTTTGAAGATGGAGACAGAGACTTCTGCACCTGGAGAACAGCCCAAGTTCCTAGGAGTGAG
Seq C2 exon
GGAACAAAGAGTCACTGGAACCCTTGTGTTTATTCTGACTGGTCTGTCAGTCTTTATGGCTCCCATCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002348-'40-25,'40-24,41-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.2=100)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGAGTCCAAACCGAGGTT
R:
CTTCAAGATGGGAGCCATAAAGACT
Band lengths:
234-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]