GgaEX6034852 @ galGal3
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
NA
Coordinates
chr4:51852511-51858496:+
Coord C1 exon
chr4:51852511-51852672
Coord A exon
chr4:51856853-51857031
Coord C2 exon
chr4:51858424-51858496
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGTCTCCCTTCACAGAAA
3' ss Score
12.09
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CCAACCAGTCCCGAGAGGGGCTGGTTTATCCCACCTTTTGGAGGGAACCCATGGTGGGTGTACCTGGCAGCAGCCATCCCTGCACTGCTGGTGACTATCCTCATCTTCATGGACCAGCAAATCACAGCCGTCATTGTCAACAGGAAGGAACACAAGCTCAAG
Seq A exon
AAAGGTGCTGGATATCACCTGGATTTGTTCTGGGTGGCCATTCTGATGATTGTCTGCTCCTTTATGGGTCTGCCCTGGTATGTTGCTGCTACTGTGATCTCCATTGCTCATATTGACAGCTTGAAGATGGAGACTGAGACTTCAGCCCCCGGAGAACAGCCCAAGTTTTTGGGAGTGAG
Seq C2 exon
GGAGCAGAGAGTCACTGGAGTCATTGTTTTCATTCTGACTGGTGTGTCTGTCTTTATGGCTCCTATCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'26-24,'26-22,27-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.2=100)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGGGCTGGTTTATCCCA
R:
AGATAGGAGCCATAAAGACAGACAC
Band lengths:
218-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]