BtaEX6032375 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017335 | HGFAC
Description
Bos taurus HGF activator (HGFAC), mRNA. [Source:RefSeq mRNA;Acc:NM_001207029]
Coordinates
chr6:107265523-107267822:+
Coord C1 exon
chr6:107265523-107265715
Coord A exon
chr6:107267258-107267397
Coord C2 exon
chr6:107267682-107267822
Length
140 bp
Sequences
Splice sites
3' ss Seq
CACCAGCCCCTGCTGCACAGCCC
3' ss Score
1.95
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CAGCTGGACGCCAGACCTGCGGCAAGAGACACAAGAAGAGGACCTTCCTGCGGCCCCGCATTATCGGCGGCTCCTCCTCGCTGCCCGGCTCCCATCCCTGGCTGGCCGCCATCTACATCGGGAACAACTTCTGTGCGGGGAGCCTCGTCCACACCTGCTGGGTGGTGTCTGCCGCCCACTGCTTCTCCAATAG
Seq A exon
CCCCCCCAGGGAAAGCGTCTCCGTGGTCTTGGGCCAGCACTTCTTCAACCGCACGACGGACGTGACACAGACGTTTGGCATCGAGAAGTACATCCCGTACCCGCTGTACTCGGTGTTCAACCCCAGTGACCACGACCTCG
Seq C2 exon
TCCTGATCCGGCTGGAGAAGAAAGGGGAGCGCTGCGCCGTCCGCTCCCAGTTCGTCCAGCCCATCTGTCTGCCCGAGCCTGGCAGCTCCTTCCCCCCGGGACACAAGTGCCAGATAGCAGGCTGGGGCCACCAGGATGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017335-'1-7,'1-4,2-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.8=67.7)
A:
PF0008921=Trypsin=FE(20.1=100)
C2:
PF0008921=Trypsin=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCAAGAGACACAAGAAGA
R:
CAGATGGGCTGGACGAACTG
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]