MmuEX0022853 @ mm10
Exon Skipping
Gene
ENSMUSG00000029102 | Hgfac
Description
hepatocyte growth factor activator [Source:MGI Symbol;Acc:MGI:1859281]
Coordinates
chr5:35045212-35047024:+
Coord C1 exon
chr5:35045212-35045506
Coord A exon
chr5:35046489-35046628
Coord C2 exon
chr5:35046884-35047024
Length
140 bp
Sequences
Splice sites
3' ss Seq
CCTGCCAGCTTCCTGTGCAGCCC
3' ss Score
6.23
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GGGAATCCAGGGGTATGAACCGATGACCTCCACTCCCAGAATCCCTGGCCAGAGTCCACTCCCAAACCCCGGAGATCCTAGCAGCCCTGCCCGAGTCAGCCCCGGCTGTGCGTCCTACCTGTGGCAAGAGGCACAAGAAGAGGACGTTCTTGAGACCACGCATCATCGGGGGCTCATCATCTTTGCCTGGCTCACACCCCTGGCTGGCTGCCATCTACATTGGGAATAGCTTCTGTGCCGGGAGCCTTGTCCATACCTGCTGGGTAGTGTCTGCAGCCCACTGCTTCGCCAACAG
Seq A exon
CCCCCCCAGGGACAGCATCACAGTGGTACTGGGTCAGCACTTCTTCAACCGCACCACGGATGTGACACAGACATTTGGCATTGAGAAGTATGTGCCCTACACCCTGTACTCGGTGTTCAACCCCAACAACCATGACCTTG
Seq C2 exon
TCTTGATCCGGCTAAAGAAGAAGGGAGAGCGCTGTGCTGTCCGCTCCCAGTTTGTTCAACCCATCTGCCTGCCTGAGGCAGGCAGCTCCTTCCCTACTGGACACAAGTGTCAGATTGCAGGCTGGGGCCACATGGATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029102_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(0.1=0.0),PF0008921=Trypsin=PU(36.4=50.0)
A:
PF0008921=Trypsin=FE(20.1=100)
C2:
PF0008921=Trypsin=FE(20.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATCATCTTTGCCTGGCT
R:
CCAGCCTGCAATCTGACACTT
Band lengths:
249-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types